2KUV: Base Pair Morphology Step Parameters

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NDB ID: 2KUV PDB ID: 2KUV

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A7U8:A41U42_AA	0.233	-0.976	3.416	-0.638	9.383	35.165	-2.882	-0.463	3.059	15.198	1.033	36.362
1	12	AA_A12U13:A34U36_AA	-0.194	-1.879	3.358	3.22	-10.121	46.383	-1.447	0.522	3.648	-12.655	-4.026	47.518
1	18	AA_A18A19:U28U29_AA	0.382	-1.242	3.517	-3.172	-10.968	29.206	0.059	-1.391	3.673	-20.776	6.009	31.313
1	19	AA_A19A20:C27U28_AA	0.513	-0.079	3.943	10.414	17.914	39.853	-2.117	0.496	3.616	24.389	-14.177	44.723
1	20	AA_A20U21:U26C27_AA	1.5	1.07	2.418	-4.461	12.975	41.683	0.486	-2.337	2.464	17.668	6.074	43.788
1	3	AA_C3U4:A45G46_AA	1.098	-0.771	3.325	2.868	12.831	37.48	-2.629	-1.286	2.986	19.257	-4.304	39.641
1	5	AA_C5G6:C43G44_AA	-0.245	-0.191	3.534	-1.272	7.987	37.223	-1.385	0.202	3.429	12.334	1.965	38.061
1	1	AA_G1G2:C47C48_AA	0.624	-1.03	3.2	-2.989	12.963	34.627	-3.223	-1.352	2.601	20.85	4.808	37.021
1	2	AA_G2C3:G46C47_AA	-0.321	-0.833	4.102	-2.784	-20.318	35.152	1.831	0.047	4.002	-30.638	4.199	40.533
1	6	AA_G6A7:U42C43_AA	1.881	-0.615	4.683	-1.305	-18.28	28.934	3.253	-3.51	4.237	-32.765	2.34	34.145
1	10	AA_G10U11:A37C38_AA	0.912	-1.222	3.237	-2.452	-6.724	31.986	-0.987	-2.046	3.34	-12.016	4.382	32.757
1	4	AA_U4C5:G44A45_AA	-0.409	-0.902	3.469	-2.07	20.101	29.949	-4.297	0.37	2.431	34.409	3.543	35.999
1	8	AA_U8U9:A40A41_AA	-0.35	-0.591	3.328	0.847	17.982	31.884	-3.375	0.673	2.628	29.94	-1.41	36.5
1	9	AA_U9G10:C38A40_AA	-0.145	-1.596	6.511	-20.05	8.094	45.546	-3.037	-2.689	5.756	9.83	24.35	50.17
1	11	AA_U11A12:U36A37_AA	2.174	-0.864	3.48	-0.657	7.47	26.636	-3.66	-4.711	3.074	15.819	1.391	27.653
1	13	AA_U13U14:A33A34_AA	0.445	-1.215	3.86	-0.364	2.504	34.167	-2.522	-0.822	3.76	4.254	0.618	34.258
1	14	AA_U14U15:A32A33_AA	-0.521	-1.049	3.672	-0.759	3.305	27.984	-3.009	0.873	3.54	6.803	1.561	28.184
1	15	AA_U15U16:A31A32_AA	0.467	-0.87	3.493	-0.353	11.478	31.598	-3.434	-0.868	2.999	20.26	0.624	33.57
1	16	AA_U16U17:A30A31_AA	-0.37	-1.053	3.254	-0.953	7.385	32.846	-2.977	0.489	2.963	12.855	1.658	33.657
1	17	AA_U17A18:U29A30_AA	-1.183	-1.438	3.645	-1.417	2.374	28.837	-3.455	2.02	3.571	4.753	2.838	28.967

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.