A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2KXM  PDB ID: 2KXM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_C3:G25_A0.275-0.037-0.1239.011-17.5531.402
18A_C11:G20_A-0.0670.0350.1756.361-8.731.757
19A_C12:G19_A0.665-0.138-0.32319.8-17.244-0.895
11A_G1:C27_A-0.361-0.082-0.061-12.696-13.421-1.044
12A_G2:U26_A-2.148-0.3610.1770.353-13.2960.258
15A_G5:C23_A-0.48-0.097-0.105-19.5-15.471-2.246
16A_G9:C22_A-0.217-0.105-0.219-5.893-11.017-0.428
14A_U4:A24_A0.099-0.075-0.161-3.446-25.0830.844
17A_U10:U21_A2.832-1.812-0.147-2.812-19.4668.563
110A_U13:U18_A2.699-1.8380.36414.376-24.9099.504

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.