2KXM: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KXM PDB ID: 2KXM

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_C3:G25_A	0.275	-0.037	-0.123	9.011	-17.553	1.402
1	8	A_C11:G20_A	-0.067	0.035	0.175	6.361	-8.73	1.757
1	9	A_C12:G19_A	0.665	-0.138	-0.323	19.8	-17.244	-0.895
1	1	A_G1:C27_A	-0.361	-0.082	-0.061	-12.696	-13.421	-1.044
1	2	A_G2:U26_A	-2.148	-0.361	0.177	0.353	-13.296	0.258
1	5	A_G5:C23_A	-0.48	-0.097	-0.105	-19.5	-15.471	-2.246
1	6	A_G9:C22_A	-0.217	-0.105	-0.219	-5.893	-11.017	-0.428
1	4	A_U4:A24_A	0.099	-0.075	-0.161	-3.446	-25.083	0.844
1	7	A_U10:U21_A	2.832	-1.812	-0.147	-2.812	-19.466	8.563
1	10	A_U13:U18_A	2.699	-1.838	0.364	14.376	-24.909	9.504

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.