2KXM: Base Pair Morphology Step Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: 2KXM PDB ID: 2KXM

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_C3U4:A24G25_AA	0.831	-1.605	3.52	4.379	14.08	30.772	-4.972	-0.726	2.647	24.824	-7.721	34.045
1	8	AA_C11C12:G19G20_AA	-0.99	-1.61	3.012	-2.429	5.591	27.677	-4.435	1.525	2.716	11.511	5.001	28.328
1	9	AA_C12U13:U18G19_AA	0.58	-0.878	3.386	-2.238	10.51	43.641	-2.104	-0.963	3.074	13.888	2.957	44.882
1	1	AA_G1G2:U26C27_AA	-0.495	-1.295	2.845	-4.109	5.592	25.326	-4.12	0.16	2.552	12.46	9.155	26.244
1	2	AA_G2C3:G25U26_AA	0.226	-0.653	3.081	0.665	10.285	41.034	-1.877	-0.25	2.847	14.4	-0.93	42.254
1	5	AA_G5G9:C22C23_AA	-1.274	-0.952	3.021	-1.207	8.942	38.896	-2.323	1.742	2.781	13.213	1.783	39.889
1	6	AA_G9U10:U21C22_AA	-0.583	-0.244	3.299	-1.149	7.8	52.727	-0.77	0.577	3.246	8.727	1.286	53.271
1	4	AA_U4G5:C23A24_AA	-0.034	-1.677	3.633	0.194	26.865	30.542	-5.251	0.069	1.68	42.201	-0.304	40.464
1	7	AA_U10C11:G20U21_AA	0.622	-0.735	3.08	0.981	11.42	15.048	-7.458	-1.447	2.047	37.331	-3.206	18.896

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.