A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2KY0  PDB ID: 2KY0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A2:U20_B0.1990.054-0.319-15.64-11.486-1.584
15A_A5:G17_B-0.1211.629-0.098.886-14.995-16.386
13A_C3:G19_B0.458-0.1020.141-9.711-11.110.204
17A_C7:G15_B0.224-0.0530.08110.787-16.689-0.83
110A_C10:G12_B0.476-0.1170.0188.568-10.041-1.168
11A_G1:C21_B-0.586-0.134-0.195-15.485-12.1870.03
14A_G4:C18_B-0.175-0.0480.151-6.261-15.183-0.773
16A_G6:A16_B-0.11.629-0.2164.187-11.449-17.002
18A_G8:C14_B-0.477-0.144-0.0421.867-14.7180.53
19A_U9:A13_B-0.1260.013-0.1965.161-12.827-0.413

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.