2KY0: Base Pair Morphology Step Parameters

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NDB ID: 2KY0 PDB ID: 2KY0

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	AA_A2C3:G19U20_BB	0.333	-1.554	3.245	0.224	6.073	29.937	-4.093	-0.589	2.883	11.605	-0.429	30.534
1	5	AA_A5G6:A16G17_BB	-0.248	-2.568	3.463	-1.48	10.033	21.835	-9.047	0.17	2.105	24.835	3.662	24.049
1	3	AA_C3G4:C18G19_BB	0.534	-1.619	3.112	2.932	16.101	28.984	-5.099	-0.523	2.004	29.399	-5.354	33.199
1	7	AA_C7G8:C14G15_BB	-0.51	-1.818	3.399	-2.554	16.24	31.155	-5.241	0.495	2.241	27.933	4.393	35.131
1	1	AA_G1A2:U20C21_BB	-0.267	-1.928	3.37	2.907	9.392	32.246	-4.777	0.909	2.686	16.439	-5.088	33.674
1	4	AA_G4A5:G17C18_BB	-0.996	-1.673	3.103	2.644	-0.581	30.232	-3.085	2.402	3.038	-1.111	-5.056	30.35
1	6	AA_G6C7:G15A16_BB	0.896	-1.913	3.162	-4.813	0.962	32.609	-3.525	-2.348	2.947	1.701	8.512	32.966
1	8	AA_G8U9:A13C14_BB	-0.268	-1.55	3.271	-1.152	5.677	30.801	-3.898	0.288	2.953	10.571	2.145	31.328
1	9	AA_U9C10:G12A13_BB	0.111	-1.916	3.267	-2.055	9.395	30.599	-5.018	-0.539	2.568	17.274	3.779	32.04

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.