2KY2: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KY2 PDB ID: 2KY2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A4:G14_B	-0.041	1.624	-0.259	-2.933	-6.014	-17.122
1	7	A_C7:G11_B	0.401	-0.071	-0.103	13.715	-13.597	0.428
1	8	A_C8:G10_B	0.672	-0.169	-0.154	8.929	-12.951	0.738
1	1	A_G1:C17_B	-0.598	-0.166	-0.212	-10.43	-12.341	-0.404
1	2	A_G2:C16_B	-0.376	-0.068	-0.118	-13.661	-14.05	0.895
1	5	A_G5:A13_B	-0.026	1.664	-0.162	-1.574	-2.858	-18.74
1	6	A_G6:U12_B	-2.377	-0.417	0.226	9.661	-5.867	-2.587
1	3	A_U3:G15_B	2.323	-0.324	0.233	-8.276	-5.656	1.242

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.