2KYE: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098

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NDB ID: 2KYE PDB ID: 2KYE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A2:PSU14_A	-0.376	-0.048	0.252	4.836	-2.81	-10.968
1	4	A_A4:PSU12_A	0.396	-0.025	0.018	-5.129	-2.04	0.321
1	1	A_G1:C15_A	0.374	-0.108	-0.153	5.829	8.581	-1.534
1	3	A_G3:C13_A	0.621	-0.072	-0.773	-13.296	-1.952	-1.777
1	5	A_G5:C11_A	0.288	-0.068	-0.059	6.261	-3.543	-6.369
1	6	A_PSU6:G10_A	4.065	0.147	0.331	4.193	9.529	43.872

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.