A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2L1F  PDB ID: 2L1F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
113A_A325:U336_A-0.288-0.0640.167-1.06-11.872-6.453
114A_A326:U335_A-0.318-0.0590.1247.775-14.735-7.591
116A_A328:U333_A-0.094-0.071-0.35-9.8948.748-4.243
133A_A362:U367_A0.2670.031-0.27310.38321.742-14.498
12A_C311:G351_A-0.105-0.0590.023-1.51110.034-2.769
15A_C316:G348_A-0.104-0.05-0.03-8.15613.739-3.939
16A_C317:G347_A0.048-0.0840.1790.2733.511-2.689
115A_C327:G334_A-0.065-0.0780.2012.222-12.449-3.784
127A_C356:G373_A0.131-0.090.1145.197-15.832-3.181
128A_C357:G372_A0.139-0.1220.324-0.39-12.594-4.363
11A_G310:C352_A-0.361-0.109-0.08-10.5555.835-1.85
13A_G312:C350_A-0.165-0.0490.28112.3132.157-2.867
14A_G313:C349_A-0.405-0.1390.015-1.036-15.444-1.864
17A_G318:C346_A-0.289-0.1380.4266.48-3.464-4.173
18A_G320:C345_A-0.114-0.0740.49311.991-6.172-4.211
19A_G321:C344_A-0.211-0.1140.130.237-20.829-1.717
111A_G323:C342_A0.194-0.0020.144-10.913-8.113-1.589
112A_G324:C337_A-0.209-0.1420.3915.479-15.393-5.305
130A_G359:C370_A-0.168-0.1040.1383.667-10.321-2.829
131A_G360:C369_A-0.297-0.119-0.064-0.425-11.943-1.984
132A_G361:C368_A0.181-0.054-0.455-7.055-1.083-3.663
110A_U322:A343_A-0.4760.0290.522-12.53-27.331-15.997
129A_U358:A371_A0.036-0.0190.1431.216-13.949-6.461
123B_A771:U758_B0.016-0.0160.156-1.052-15.593-6.998
142B_C711:G751_B-0.098-0.0580.04-1.2869.527-2.717
145B_C716:G748_B-0.113-0.047-0.045-8.49213.9-3.984
146B_C717:G747_B0.039-0.080.121.1073.847-2.557
134B_C731:G366_A0.168-0.0870.0154.531-4.667-2.967
140B_C737:G724_B0.208-0.1390.391-5.788-15.177-5.146
117B_C765:G332_A0.215-0.0560.387-17.49210.846-2.753
120B_C768:G761_B-0.214-0.051-0.4637.2960.686-3.677
121B_C769:G760_B0.198-0.098-0.0711.383-13.179-1.645
122B_C770:G759_B0.108-0.0920.081-2.178-10.278-2.481
141B_G710:C752_B-0.337-0.112-0.079-9.0285.757-2.057
143B_G712:C750_B-0.161-0.0520.26711.7651.653-2.777
144B_G713:C749_B-0.378-0.1350.032-0.493-15.459-1.974
147B_G718:C746_B-0.305-0.130.3747.42-2.445-3.961
148B_G720:C745_B-0.119-0.0610.42612.924-6.139-3.904
149B_G721:C744_B-0.181-0.1080.1250.328-20.794-1.633
151B_G723:C742_B0.212-0.0090.187-10.133-8.706-1.81
135B_G732:C365_A-0.064-0.0340.27216.94814.079-2.33
137B_G734:C727_B0.106-0.0680.111-3.692-13.04-3.753
118B_G766:C331_A-0.146-0.1120.4213.052-5.436-3.874
124B_G772:C757_B-0.13-0.1190.315-1.102-13.647-4.496
125B_G773:C756_B-0.115-0.0930.136-4.773-15.194-3.482
126B_G774:C755_B0.106-0.04-0.042-7.169-2.619-2.639
150B_U722:A743_B-0.3870.0170.498-11.962-27.561-15.504
136B_U733:A728_B-0.402-0.067-0.57411.93315.965-7.193
138B_U735:A726_B0.346-0.0560.137-8.704-12.613-7.485
139B_U736:A725_B0.281-0.0630.1580.265-11.386-6.419
119B_U767:A762_B-0.3190.043-0.22-10.76521.03-13.2

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.