A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: 2L1V  PDB ID: 2L1V 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A3:U24_A-0.926-0.126-0.053-4.921-4.2222.173
13A_A5:U22_A0.763-0.0770.12-5.209-6.539-0.99
18A_A12:U34_A-0.599-0.453-0.704-7.258-10.9749.517
12A_G4:C23_A0.05-0.2350.033-4.482-20.139-1.365
14A_G6:C21_A0.350.103-0.119-6.372-4.05-4.885
15A_G7:C20_A0.324-0.1440.151-1.539-2.13-0.594
17A_G13:C33_A-0.463-0.134-0.104-7.471-11.022-7.499
16A_U8:A31_A0.1333.4020.811-17.543-30.262-56.255
19A_U11:A35_A1.0470.0070.5896.001-17.5399.508

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.