2L1V: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: 2L1V PDB ID: 2L1V

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	AA_A3G4:C23U24_AA	0.287	-1.459	3.376	-2.679	3.882	33.027	-3.189	-0.947	3.156	6.786	4.682	33.352
1	3	AA_A5G6:C21U22_AA	-0.439	-0.859	3.949	1.943	8.767	30.473	-3.454	1.221	3.537	16.243	-3.6	31.738
1	8	AA_A12U11:A35U34_AA	-0.135	-0.603	-4.372	-6.83	-3.239	-34.877	0.351	1.116	-4.357	5.327	-11.232	-35.662
1	2	AA_G4A5:U22C23_AA	-0.098	-1.881	3.048	-2.789	2.426	36.433	-3.299	-0.194	2.921	3.868	4.447	36.614
1	4	AA_G6G7:C20C21_AA	1.253	-1.684	3.28	-1.844	-2.797	28.87	-2.732	-2.909	3.34	-5.585	3.684	29.06
1	5	AA_G7U8:A31C20_AA	-6.052	-1.949	2.558	11.751	-18.565	17.827	-1.579	13.942	0.398	-43.434	-27.491	28.225
1	7	AA_G13A12:U34C33_AA	-0.468	2.044	-2.568	2.087	-21.024	-29.311	-5.074	-0.932	-0.909	36.216	3.595	-35.996
1	6	AA_U8G13:C33A31_AA	4.691	-0.404	-4.773	-77.767	-128.474	18.904	-3.054	-0.703	-2.864	-74.851	45.308	150.592

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.