2L2J: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2L2J PDB ID: 2L2J

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A4:U39_A	-0.141	-0.118	0.176	3.733	-13.697	-3.721
1	5	A_A5:C38_A	-2.101	-0.18	0.024	0.18	-10.929	-0.59
1	15	A_A15:C28_A	-1.882	-0.174	0.264	2.959	-9.177	-1.13
1	16	A_A16:U27_A	0.356	-0.059	0.156	-0.968	-6.816	-2.48
1	18	A_C18:G25_A	0.329	-0.053	0.026	-3.39	-1.189	1.033
1	19	A_C19:G24_A	0.507	-0.216	-0.396	4.301	3.764	-1.137
1	1	A_G1:C42_A	-0.561	-0.21	0.293	0.091	-14.674	-0.646
1	2	A_G2:C41_A	-0.125	-0.129	0.598	2.726	-11.566	-1.669
1	6	A_G6:C37_A	-0.617	-0.197	0.367	0.406	-9.746	-0.289
1	7	A_G7:C36_A	-0.419	-0.245	0.238	-8.315	-15.792	-3.302
1	9	A_G9:U34_A	-1.433	-0.548	0.876	5.338	-18.089	-7.929
1	10	A_G10:C33_A	-0.157	-0.252	0.766	3.718	-16.486	-3.792
1	11	A_G11:C32_A	-0.161	-0.215	0.553	-4.299	-21.3	-4.47
1	13	A_G13:C30_A	-0.333	-0.214	0.583	2.69	-13.307	-2.664
1	14	A_G14:C29_A	-0.656	-0.309	0.437	0.057	-14.374	-2.318
1	3	A_U3:G40_A	1.666	-0.551	0.677	-2.988	-15.458	-6.118
1	8	A_U8:A35_A	-0.21	-0.157	0.803	-9.003	-8.731	1.493
1	12	A_U12:A31_A	-0.355	-0.095	0.708	-6.804	-12.741	-2.086
1	17	A_U17:A26_A	-0.237	-0.039	0.309	-5.111	-8.496	2.331
1	20	A_U20:G23_A	0.845	-5.509	-0.168	0.122	-17.779	-103.01

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.