A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2L2J  PDB ID: 2L2J 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U39_A-0.141-0.1180.1763.733-13.697-3.721
15A_A5:C38_A-2.101-0.180.0240.18-10.929-0.59
115A_A15:C28_A-1.882-0.1740.2642.959-9.177-1.13
116A_A16:U27_A0.356-0.0590.156-0.968-6.816-2.48
118A_C18:G25_A0.329-0.0530.026-3.39-1.1891.033
119A_C19:G24_A0.507-0.216-0.3964.3013.764-1.137
11A_G1:C42_A-0.561-0.210.2930.091-14.674-0.646
12A_G2:C41_A-0.125-0.1290.5982.726-11.566-1.669
16A_G6:C37_A-0.617-0.1970.3670.406-9.746-0.289
17A_G7:C36_A-0.419-0.2450.238-8.315-15.792-3.302
19A_G9:U34_A-1.433-0.5480.8765.338-18.089-7.929
110A_G10:C33_A-0.157-0.2520.7663.718-16.486-3.792
111A_G11:C32_A-0.161-0.2150.553-4.299-21.3-4.47
113A_G13:C30_A-0.333-0.2140.5832.69-13.307-2.664
114A_G14:C29_A-0.656-0.3090.4370.057-14.374-2.318
13A_U3:G40_A1.666-0.5510.677-2.988-15.458-6.118
18A_U8:A35_A-0.21-0.1570.803-9.003-8.7311.493
112A_U12:A31_A-0.355-0.0950.708-6.804-12.741-2.086
117A_U17:A26_A-0.237-0.0390.309-5.111-8.4962.331
120A_U20:G23_A0.845-5.509-0.1680.122-17.779-103.01

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.