A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2L3E  PDB ID: 2L3E 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_C3:G33_A0.689-0.07-0.2011.9610.6220.212
18A_C14:G27_A0.751-0.365-0.0748.749-10.414-2.504
112A_C18:G23_A0.828-0.3110.2325.06-10.419-0.041
11A_G1:C35_A0.35-0.084-0.143-2.041-1.072-4.148
12A_G2:C34_A-0.758-0.1770.003-5.48-4.6932.294
19A_G15:C26_A-0.094-0.254-0.14-3.946-15.1610.259
111A_G17:C24_A-0.679-0.4160.028-6.175-22.957-2.904
14A_U4:A32_A0.868-0.280.0111.056-2.4836.478
15A_U5:A31_A-0.413-0.0520.1741.227-7.9426.057
16A_U6:A30_A0.689-0.260.149-0.372-2.459.914
17A_U7:A29_A1.037-0.3010.2382.552-23.12320.173
110A_U16:A25_A0.531-0.3260.014-0.358-9.625-0.6
113A_U19:G22_A1.586-4.7340.359-1.446-3.182-89.905

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.