2L3E: Base Pair Morphology Step Parameters

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NDB ID: 2L3E PDB ID: 2L3E

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_C3U4:A32G33_AA	-0.197	-1.19	3.495	3.062	18.703	24.13	-5.775	0.95	2.033	38.102	-6.238	30.596
1	7	AA_C14G15:C26G27_AA	0.737	-2.224	3.435	-1.07	8.059	24.039	-7.251	-1.97	2.532	18.678	2.48	25.357
1	11	AA_C18U19:G22G23_AA	0.654	-1.102	3.347	8.71	10.265	99.635	-0.88	-0.288	3.289	6.696	-5.681	100.301
1	1	AA_G1G2:C34C35_AA	0.424	-1.892	3.555	-1.88	10.709	29.077	-5.571	-1.151	2.675	20.45	3.59	31.002
1	2	AA_G2C3:G33C34_AA	0.028	-0.685	4.137	1.049	-11.157	36.952	0.753	0.127	4.163	-17.125	-1.611	38.557
1	8	AA_G15U16:A25C26_AA	-0.633	-1.35	3.148	-1.239	6.149	35.68	-2.978	0.857	2.903	9.941	2.003	36.21
1	10	AA_G17C18:G23C24_AA	-0.278	-0.223	3.112	-1.16	-2.11	40.062	-0.095	0.279	3.126	-3.077	1.692	40.132
1	4	AA_U4U5:A31A32_AA	1.416	-0.976	3.425	4.838	6.957	29.807	-3.237	-1.672	3.302	13.192	-9.175	30.962
1	5	AA_U5U6:A30A31_AA	1.08	-1.373	3.566	-2.7	8.479	29.98	-4.191	-2.528	2.97	15.954	5.079	31.244
1	6	AA_U6U7:A29A30_AA	-0.155	-1.272	2.667	1.825	2.757	36.671	-2.314	0.443	2.558	4.371	-2.893	36.815
1	9	AA_U16G17:C24A25_AA	-0.618	-1.945	2.933	3.929	12.64	28.03	-5.51	1.738	1.807	24.445	-7.599	30.942

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.