2L5Z: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: 2L5Z PDB ID: 2L5Z

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A2:U25_A	-0.311	-0.236	-0.707	-0.264	-1.637	-0.365
1	9	A_A11:U18_A	0.117	-0.089	0.477	8.168	-1.744	-2.513
1	4	A_C4:G23_A	0.655	-0.309	-0.603	-13.168	3.26	-2.122
1	8	A_C10:G19_A	0.448	-0.172	0.341	-4.491	-7.798	-3.083
1	10	A_C12:G17_A	0.636	-0.232	0.503	-1.754	7.752	-1.341
1	1	A_G1:C26_A	-0.782	-0.19	0.11	32.11	-8.959	1.372
1	3	A_G3:C24_A	-0.611	-0.231	-0.426	1.41	-8.329	-1.004
1	6	A_G6:C21_A	-0.659	-0.134	0.36	21.967	1.83	-1.679
1	7	A_G9:A20_A	-0.443	1.119	-1.269	23.372	6.279	-16.426
1	11	A_G13:A16_A	5.68	-3.508	1.625	23.721	14.54	19.557
1	5	A_U5:G22_A	2.145	-0.499	0.625	-13.053	-26.938	-5.407

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.