A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: 2L5Z  PDB ID: 2L5Z 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_A2:U25_A-0.311-0.236-0.707-0.264-1.637-0.365
19A_A11:U18_A0.117-0.0890.4778.168-1.744-2.513
14A_C4:G23_A0.655-0.309-0.603-13.1683.26-2.122
18A_C10:G19_A0.448-0.1720.341-4.491-7.798-3.083
110A_C12:G17_A0.636-0.2320.503-1.7547.752-1.341
11A_G1:C26_A-0.782-0.190.1132.11-8.9591.372
13A_G3:C24_A-0.611-0.231-0.4261.41-8.329-1.004
16A_G6:C21_A-0.659-0.1340.3621.9671.83-1.679
17A_G9:A20_A-0.4431.119-1.26923.3726.279-16.426
111A_G13:A16_A5.68-3.5081.62523.72114.5419.557
15A_U5:G22_A2.145-0.4990.625-13.053-26.938-5.407

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.