2L6I: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2L6I PDB ID: 2L6I

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	A_A43:U55_A	-0.004	-0.104	-0.162	0.25	-14.13	-0.265
1	4	A_C45:G53_A	0.137	-0.134	-0.167	1.605	-12.317	-0.136
1	6	A_C47:G50_A	0.106	-0.128	-0.109	10.911	7.372	-1.433
1	1	A_G42:C56_A	-0.109	-0.106	0.243	11.464	-1.119	-2.09
1	3	A_U44:A54_A	-0.018	-0.099	0.077	2.963	-12.804	-2.664
1	5	A_U46:A52_A	-0.033	-0.084	0.125	-3.719	-3.406	-2.236

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.