2L8W: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2L8W PDB ID: 2L8W

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_C1:G18_B	-0.13	0.025	-0.949	29.387	-33.772	8.619
1	2	A_C2:G17_B	0.23	-0.12	-0.137	-1.391	-10.067	0.419
1	4	A_C4:G15_B	0.557	-0.301	-0.139	7.099	-14.827	-2.026
1	7	A_C7:G12_B	0.556	-0.294	-0.472	-2.762	-0.455	-1.675
1	3	A_G3:C16_B	-0.259	-0.062	-0.631	-12.342	-3.796	-0.828
1	6	A_G6:C13_B	-0.483	-0.156	-0.463	-6.034	3.09	2.077
1	8	A_G8:C11_B	-0.398	0.147	0.034	-5.4	-13.584	0.404
1	9	A_G9:C10_B	-0.971	-0.116	-0.475	-21.506	-32.347	7.55
1	5	A_U5:U14_B	2.237	-1.74	0.021	12.561	-17.252	4.583

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.