A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2LDZ  PDB ID: 2LDZ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U27_A-0.46-0.2550.07910.944-30.9722.813
19A_A12:U21_A0.014-0.180.74712.2933.2236.46
12A_C2:G29_A-0.453-0.084-0.065-31.4979.263-5.204
15A_C5:G26_A-0.21-0.2880.3388.481-27.063-4.881
16A_C6:A25_A1.713-0.1390.281-2.401-28.2552.153
17A_C10:G23_A0.102-0.13-0.0378.806-21.261-3.648
18A_C11:G22_A0.326-0.106-0.18-5.232-11.1394.228
111A_C14:G19_A0.9-0.476-1.26316.513-13.7131.909
11A_G1:C30_A-0.244-0.778-1.885-13.903-12.8297.241
13A_G3:C28_A-0.431-0.6621.75513.9717.2783.746
110A_G13:U20_A-3.149-0.665-0.518.241-3.4117.671
112A_G15:A18_A5.633-5.6472.40312.0212.647-18.824

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.