2LDZ: Base Pair Morphology Step Parameters

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NDB ID: 2LDZ PDB ID: 2LDZ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A4C5:G26U27_AA	0.392	-1.344	2.959	-3.766	6.944	32.233	-3.355	-1.229	2.561	12.279	6.659	33.162
1	8	AA_A12G13:U20U21_AA	0.656	-2.554	2.993	4.064	11.744	17.636	-10.161	-0.602	1.197	33.439	-11.572	21.546
1	2	AA_C2G3:C28G29_AA	0.023	-2.05	1.846	-12.897	-1.583	18.275	-4.934	-2.88	1.641	-4.341	35.38	22.392
1	5	AA_C5C6:A25G26_AA	1.427	-0.946	3.145	9.376	8.325	50.593	-1.623	-1.014	3.163	9.573	-10.782	52.024
1	6	AA_C10C11:G22G23_AA	-0.698	-1.977	3.287	-0.155	16.098	35.016	-4.772	1.044	2.205	25.176	0.242	38.434
1	7	AA_C11A12:U21G22_AA	0.03	-1.695	2.536	-7.355	7.129	32.663	-3.695	-0.89	2.076	12.304	12.693	34.19
1	10	AA_C14G15:A18G19_AA	-2.419	-1.549	3.384	-10.613	33.665	49.123	-3.221	1.898	2.406	35.699	11.255	59.844
1	1	AA_G1C2:G29C30_AA	-1.833	-1.448	3.515	-16.697	16.676	29.523	-4.669	0.415	2.945	27.804	27.839	37.63
1	3	AA_G3A4:U27C28_AA	-0.092	-1.178	3.283	15.028	13.557	44.55	-2.423	1.214	2.679	16.889	-18.722	48.718
1	9	AA_G13C14:G19U20_AA	-0.602	-0.76	2.908	4.897	5.406	48.369	-1.275	1.05	2.744	6.554	-5.937	48.883

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.