A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 2LEF  PDB ID: 2LEF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA2:DT14_C-0.013-0.1350.29411.984-13.984-3.817
110B_DA10:DT6_C0.272-0.0670.56529.204-13.803-8.703
111B_DA11:DT5_C0.304-0.0910.71831.419-19.314-5.913
11B_DC1:DG15_C0.425-0.2-0.08821.729-22.7-2.231
13B_DC3:DG13_C0.32-0.2880.2713.243-23.397-2.363
14B_DC4:DG12_C0.494-0.2570.504-14.92-18.102-0.906
15B_DC5:DG11_C0.648-0.338-0.177-4.401-2.238-0.441
113B_DC13:DG3_C0.272-0.2320.385-1.741-13.204-1.793
115B_DC15:DG1_C0.499-0.238-0.1739.013-15.958-0.561
19B_DG9:DC7_C-0.196-0.179-0.1073.518-4.495-4.713
112B_DG12:DC4_C-0.513-0.3140.5946.451-17.06-3.171
16B_DT6:DA10_C0.018-0.3821.31-11.52320.43118.248
17B_DT7:DA9_C-0.206-0.431.07210.10130.4419.738
18B_DT8:DA8_C0.164-0.1920.1680.684-12.6813.377
114B_DT14:DA2_C-0.042-0.124-0.0327.145-9.799-2.134

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.