2LI4: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2LI4 PDB ID: 2LI4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U30_A	-0.807	-0.307	-0.268	-3.669	3.055	6.922
1	7	A_A7:U26_A	0.078	-0.13	0.184	0.79	-14.854	-6.485
1	9	A_A9:U24_A	-0.403	-0.316	-0.223	-2.939	-9.306	0.61
1	10	A_A10:U23_A	-0.408	-0.261	-0.241	-0.693	-5.839	2.876
1	14	A_A14:U19_A	0.089	-0.244	-0.209	-0.657	1.632	0.641
1	4	A_C4:G29_A	0.774	-0.143	-0.099	1.019	-3.752	2.922
1	5	A_C5:G28_A	-0.778	-0.205	-0.774	8.864	0.71	-7.79
1	1	A_G1:C32_A	0.484	-0.068	-0.094	-3.578	-3.713	-3.078
1	2	A_G2:C31_A	-0.291	-0.124	-0.361	-3.02	5.982	0.333
1	6	A_G6:C27_A	-0.746	-0.296	-0.124	1.935	-5.505	0.048
1	11	A_G11:C22_A	-0.73	-0.329	-0.494	-8.78	-7.167	0.906
1	12	A_G12:C21_A	0.213	0.063	-0.059	-6.432	-1.102	3.309
1	15	A_G15:A18_A	5.278	-2.67	1.795	3.645	9.6	-39.195
1	8	A_U8:A25_A	0.141	-0.079	-0.184	5.363	-17.123	0.495
1	13	A_U13:G20_A	1.82	-0.178	-0.274	-0.859	-4.094	0.207

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.