2LI4: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2LI4 PDB ID: 2LI4

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3C4:G29U30_AA	-0.233	-0.889	4.841	-4.264	-11.835	30.988	1.471	-0.682	4.839	-21.094	7.6	33.386
1	7	AA_A7U8:A25U26_AA	0.302	-0.996	4.016	2.065	-27.166	36.479	1.977	-0.144	3.858	-37.641	-2.861	45.251
1	9	AA_A9A10:U23U24_AA	-0.859	-0.793	3.906	-1.518	-9.539	36.72	0.282	1.082	4.012	-14.829	2.36	37.927
1	10	AA_A10G11:C22U23_AA	-0.39	-2.311	3.526	0.02	0.489	25.964	-5.288	0.873	3.483	1.089	-0.044	25.969
1	14	AA_A14G15:A18U19_AA	-3.753	-0.797	3.731	-1.904	20.206	50.859	-2.25	3.967	3.345	22.528	2.123	54.508
1	4	AA_C4C5:G28G29_AA	-1.417	-1.157	3.979	2.253	-15.629	23.278	2.443	3.618	3.833	-34.152	-4.924	28.067
1	5	AA_C5G6:C27G28_AA	1.744	-0.563	4.205	0.217	-9.694	36.983	0.743	-2.63	4.225	-14.968	-0.335	38.19
1	1	AA_G1G2:C31C32_AA	-0.428	-1.572	3.889	-3.735	18.781	25.36	-6.52	0.06	2.261	36.819	7.322	31.682
1	2	AA_G2A3:U30C31_AA	0.45	-1.21	5.148	2.954	-15.991	22.391	4.12	0.286	4.928	-35.742	-6.602	27.612
1	6	AA_G6A7:U26C27_AA	-0.264	-2.054	2.945	-1.211	2.383	31.452	-4.166	0.288	2.794	4.386	2.229	31.562
1	11	AA_G11G12:C21C22_AA	-0.132	-0.33	3.911	-3.616	2.317	42.556	-0.73	-0.251	3.886	3.183	4.967	42.762
1	12	AA_G12U13:G20C21_AA	-0.354	-0.881	2.933	5.088	24.694	34.844	-3.232	0.903	1.874	36.002	-7.418	42.779
1	8	AA_U8A9:U24A25_AA	0.781	-1.65	3.893	-3.683	-11.308	26.146	-0.066	-2.64	4.096	-23.509	7.656	28.681
1	13	AA_U13A14:U19G20_AA	-0.156	-0.736	4.702	-3.909	-26.271	26.496	4.253	-0.559	3.89	-45.346	6.746	37.347

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.