A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
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NDB ID: 2N8A  PDB ID: 2N8A 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
118B_DA31:DT38_B0.8010.024-0.003-23.377-6.029-7.19
12B_DC2:DG21_B0.514-0.109-0.0973.002-0.486-1.93
16B_DC6:DG17_B1.033-0.208-0.39710.186-1.8330.791
19B_DC9:DG14_B-0.1810.014-0.710.86610.21-5.194
111B_DC24:DG45_B-0.47-0.0080.058-3.5752.0411.859
113B_DC26:DG43_B-0.496-0.0340.2281.519-5.181-0.091
117B_DC30:DG39_B0.936-0.2360.46-11.772-0.774-1.822
120B_DC33:DG36_B0.584-0.096-0.1163.2232.1625.962
11B_DG1:DC22_B-0.734-0.16-0.147-2.0730.4360.623
14B_DG4:DC19_B0.63-0.0070.2174.248-6.435-4.742
15B_DG5:DC18_B-0.27-0.110.043.8870.770.818
110B_DG10:DA13_B6.819-5.5160.0889.47814.118-13.419
112B_DG25:DC44_B-0.724-0.1980.2288.793-0.301-3.642
114B_DG27:DC42_B-0.554-0.078-0.323-15.047-10.242-1.835
115B_DG28:DC41_B0.5370.013-0.097-6.812-3.0543.415
119B_DG32:DC37_B-0.633-0.142-0.261-8.696-1.6922.458
13B_DT3:DA20_B-0.381-0.0170.181-1.545-9.9511.432
17B_DT7:DA16_B0.43-0.2270.5542.431-13.338-7.472
18B_DT8:DA15_B0.544-0.191-0.207-10.9166.013-6.082
116B_DT29:DA40_B-0.745-0.003-0.017-4.3770.126-1.66

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.