2NRE: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: PR0244 PDB ID: 2NRE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	16	F_A15:U48_F	0.238	2.45	0.081	39.248	19.027	169.582
1	12	F_A29:U41_F	-0.73	-0.192	-0.818	-22.437	-17.554	-7.924
1	2	F_A49:U65_F	1.074	0.026	-0.382	-3.994	1.19	0.379
1	9	F_C25:G10_F	0.667	-0.589	-1.554	24.394	-22.962	-4.401
1	13	F_C30:G40_F	1.37	-0.329	0.215	4.412	-7.24	11.098
1	14	F_C31:G39_F	-2.58	0.57	-1.073	-3.919	49.763	12.454
1	3	F_C50:G64_F	-0.393	-0.227	0.223	-10.314	-16.655	7.162
1	1	F_G6:C67_F	1.186	0.381	-0.187	-12.164	-17.752	-0.334
1	15	F_G12:C23_F	-0.819	0.477	-0.108	-12.203	-13.907	-7.354
1	10	F_G26:U44_F	-1.331	1.571	-0.385	-22.199	-20.056	34.922
1	4	F_G51:C63_F	1.142	0.2	0.979	11.928	-5.317	16.876
1	5	F_G52:C62_F	1.11	0.142	-0.329	-9.139	-8.988	0.735
1	6	F_G53:C61_F	0.57	-0.101	-0.578	-14.282	1.957	9.602
1	11	F_U28:A42_F	-1.68	0.309	-0.187	-15.669	-13.735	3.762
1	7	F_U54:A58_F	4.666	-1.871	1.209	3.597	23.618	-100.348
1	8	F_U55:G18_F	0.776	-6.155	0.208	27.262	44.26	-97.1

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.