A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: PR0244  PDB ID: 2NRE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
116F_A15:U48_F0.2382.450.08139.24819.027169.582
112F_A29:U41_F-0.73-0.192-0.818-22.437-17.554-7.924
12F_A49:U65_F1.0740.026-0.382-3.9941.190.379
19F_C25:G10_F0.667-0.589-1.55424.394-22.962-4.401
113F_C30:G40_F1.37-0.3290.2154.412-7.2411.098
114F_C31:G39_F-2.580.57-1.073-3.91949.76312.454
13F_C50:G64_F-0.393-0.2270.223-10.314-16.6557.162
11F_G6:C67_F1.1860.381-0.187-12.164-17.752-0.334
115F_G12:C23_F-0.8190.477-0.108-12.203-13.907-7.354
110F_G26:U44_F-1.3311.571-0.385-22.199-20.05634.922
14F_G51:C63_F1.1420.20.97911.928-5.31716.876
15F_G52:C62_F1.110.142-0.329-9.139-8.9880.735
16F_G53:C61_F0.57-0.101-0.578-14.2821.9579.602
111F_U28:A42_F-1.680.309-0.187-15.669-13.7353.762
17F_U54:A58_F4.666-1.8711.2093.59723.618-100.348
18F_U55:G18_F0.776-6.1550.20827.26244.26-97.1

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.