2NRE: Base Pair Morphology Step Parameters

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NDB ID: PR0244 PDB ID: 2NRE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	11	FF_A29C30:G40U41_FF	1.753	-0.2	2.468	-6.799	3.233	42.794	-0.494	-2.839	2.158	4.39	9.233	43.421
1	2	FF_A49C50:G64U65_FF	0.069	-1.648	3.289	-4.356	2.231	36.129	-2.941	-0.709	3.156	3.578	6.985	36.448
1	8	FF_C25G26:U44G10_FF	2.17	-2.668	4.083	-1.719	35.021	22.887	-6.787	-3.2	-0.023	57.799	2.837	41.674
1	12	FF_C30C31:G39G40_FF	-1.176	-1.466	3.85	-1.28	21.618	15.72	-8.651	2.221	1.156	54.341	3.217	26.705
1	3	FF_C50G51:C63G64_FF	-0.438	-1.718	2.702	-2.146	-2.342	32.712	-2.696	0.462	2.837	-4.145	3.799	32.862
1	1	FF_G6A49:U65C67_FF	-2.303	-3.943	5.565	-5.365	17.467	61.926	-4.89	1.8	4.588	16.593	5.096	64.308
1	9	FF_G26U28:A42U44_FF	-0.321	-2.697	6.075	-12.21	23.98	69.691	-3.576	-0.415	5.046	20.246	10.309	74.089
1	4	FF_G51G52:C62C63_FF	0.223	-1.978	3.605	12.147	10.314	27.289	-5.597	1.894	2.58	19.858	-23.389	31.524
1	5	FF_G52G53:C61C62_FF	1.01	-1.837	3.474	1.957	0.645	35.431	-3.114	-1.352	3.491	1.059	-3.213	35.489
1	6	FF_G53U54:A58C61_FF	-3.044	-2.153	2.87	1.065	7.57	82.219	-1.791	2.33	2.667	5.745	-0.808	82.511
1	10	FF_U28A29:U41A42_FF	0.132	-1.355	3.759	5.083	8.222	27.538	-4.657	0.953	3.203	16.637	-10.284	29.155
1	7	FF_U54U55:G18A58_FF	1.39	-1.758	4.156	7.681	-2.113	44.48	-2.041	-0.904	4.4	-2.765	-10.051	45.152

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.