A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: PR0240  PDB ID: 2NUF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_A15:G12_C-6.707-4.8980.279-22.2248.962-14.412
13C_A17:U10_C-0.201-0.345-0.092-0.759-11.144-3.684
18C_C22:G5_C-0.302-0.226-0.141-1.299-6.014-3.566
19C_C23:G4_C0.04-0.244-0.3511.443-6.429-0.513
113C_C27:G28_D-0.042-0.1210.1631.053-13.3850.114
12C_G16:C11_C-0.124-0.246-0.22-6.6624.3830.948
14C_G18:U9_C-2.356-0.7220.3872.273-16.2531.91
16C_G20:C7_C-0.123-0.2330.043-3.929-5.9120.23
17C_G21:U6_C-1.918-0.2740.4212.131-6.962.751
112C_G26:C1_C0.06-0.0660.01-5.698-8.415-2.016
114C_G28:C27_D0.309-0.2070.1950.231-11.448-0.56
15C_U19:A8_C-0.0420.0450.194.499-12.2041.159
110C_U24:A3_C0.459-0.071-0.0086.179-3.0825.488
111C_U25:A2_C-0.161-0.2110.24-4.179-3.112-4.926
116D_A2:U25_D0.075-0.0460.235.173-5.677-1.85
117D_A3:U24_D-0.354-0.051-0.067-5.767-9.2044.536
122D_A8:U19_D0.183-0.0530.392-3.376-7.3511.309
115D_C1:G26_D0.089-0.0620.1411.466-8.534-1.024
121D_C7:G20_D0.109-0.285-0.1166.978-8.135-2.451
125D_C11:G16_D0.326-0.128-0.123.5857.7144.032
118D_G4:C23_D-0.058-0.154-0.35-2.567-6.361-0.243
119D_G5:C22_D0.183-0.158-0.30.977-3.946-4.092
126D_G12:A15_D6.845-5.4120.66522.1128.747-12.554
120D_U6:G21_D1.906-0.3120.1520.93-4.8531.007
123D_U9:G18_D2.469-0.8070.375-0.858-13.090.926
124D_U10:A17_D0.237-0.302-0.1412.818-6.38-1.547

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.