A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: DR0039  PDB ID: 2O3X 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_A10:U38_B0.039-0.220.2542.117-16.1912.57
12A_C4:G45_B-0.072-0.041-0.474.28-5.494-0.152
14A_C7:G42_B0.139-0.1-0.454.593-8.4420.714
15A_C9:G39_B0.4610.0920.1095.449-23.4387.132
17A_C11:G37_B0.169-0.15-0.5079.589-17.266.308
18A_C12:G36_B0.003-0.1880.393-0.72-9.088-5.142
115A_C21:G28_B0.183-0.1510.959-14.516-10.5271.71
117A_C23:G26_B0.281-0.217-0.158-1.909-2.9840.916
11A_G3:C46_B-0.302-0.3520.084-7.606-2.755-2.241
13A_G5:C44_B-0.014-0.1430.26-2.873-1.5264.945
19A_G13:C35_B-0.151-0.098-0.121-3.676-23.033.417
110A_G14:C34_B0.156-0.1490.065-6.051-12.8-2.689
112A_G16:C32_B0.689-0.1430.353-6.379-11.633-0.099
113A_G19:C30_B0.037-0.0710.017-0.923-5.035-4.056
116A_G22:C27_B-0.222-0.168-0.167-11.141-10.3685.228
111A_U15:A33_B0.244-0.314-0.0622.692-12.7927.23
114A_U20:U29_B-1.525-1.8270.552-6.866-11.75313.635

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.