2O3X: Base Pair Morphology Step Parameters

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NDB ID: DR0039 PDB ID: 2O3X

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	AA_A10C11:G37U38_BB	0.855	-1.449	2.976	5.74	1.371	30.541	-2.946	-0.579	3.017	2.573	-10.771	31.093
1	2	AA_C4G5:C44G45_BB	0.083	-1.707	3.499	-4.292	7.896	30.171	-4.632	-0.959	2.93	14.762	8.025	31.451
1	4	AA_C9A10:U38G39_BB	-0.02	-1.699	3.161	-1.807	17.497	30.591	-4.997	-0.193	1.936	30.232	3.122	35.182
1	6	AA_C11C12:G36G37_BB	-1.077	-1.853	3.604	-8.341	6.719	32.229	-4.351	0.388	3.329	11.707	14.533	33.917
1	7	AA_C12G13:C35G36_BB	0.394	-1.798	3.265	5.304	9.132	27.293	-5.395	0.282	2.572	18.499	-10.743	29.229
1	14	AA_C21G22:C27G28_BB	-0.046	-2.278	2.852	7.408	9.3	31.837	-5.063	1.002	2.063	16.262	-12.953	33.931
1	1	AA_G3C4:G45C46_BB	0.101	-2.023	3.138	2.833	1.264	29.655	-4.183	0.364	3.047	2.462	-5.516	29.813
1	3	AA_G5C7:G42C44_BB	0.671	-2.913	6.212	8.663	8.721	63.757	-3.4	0.052	5.852	8.177	-8.122	64.808
1	8	AA_G13G14:C34C35_BB	-0.41	-1.602	3.262	-3.548	7.501	34.258	-3.711	0.175	2.884	12.507	5.917	35.22
1	9	AA_G14U15:A33C34_BB	0.494	-0.944	2.94	3.258	3.137	30.975	-2.278	-0.366	2.869	5.836	-6.06	31.296
1	11	AA_G16G19:C30C32_BB	-1.537	-2.579	5.931	0.844	16.685	72.037	-3.075	1.328	5.296	14.002	-0.708	73.693
1	12	AA_G19U20:U29C30_BB	0.64	-2.554	3.275	-7.882	0.091	24.477	-5.768	-3.593	2.92	0.207	18.004	25.696
1	15	AA_G22C23:G26C27_BB	0.206	-0.738	3.163	0.337	4.159	34.311	-1.856	-0.297	3.057	7.017	-0.568	34.556
1	10	AA_U15G16:C32A33_BB	0.195	-1.498	3.242	1.293	17.065	35.289	-4.078	-0.151	2.31	26.325	-1.994	39.1
1	13	AA_U20C21:G28U29_BB	-0.576	-1.436	3.548	-2.823	-2.32	42.263	-1.724	0.48	3.648	-3.211	3.906	42.414

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.