A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: PD0963  PDB ID: 2O61 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA4:DT33_F0.051-0.110.1581.684-8.525-0.861
13E_DA5:DT32_F0.599-0.3070.132.889-4.2193.97
14E_DA6:DT31_F-0.021-0.2070.1082.835-10.7386.029
18E_DA10:DT27_F0.4650.069-0.1794.11-9.348-5.704
110E_DA12:DT25_F-0.016-0.240.16810.929-12.77-6.306
111E_DA13:DT24_F0.06-0.2520.5613.423-10.50.302
115E_DA17:DT20_F0.12-0.139-0.036.292-11.3146.901
116E_DA18:DT19_F0.025-0.243-0.0084.558-12.9223.636
117E_DA19:DT18_F0.157-0.3360.3270.98-13.055.125
123E_DA25:DT12_F0.231-0.0960.36813.619-4.9690.302
124E_DA26:DT11_F-0.188-0.1790.0421.953-7.3212.02
125E_DA27:DT10_F0.38-0.0790.1910.277-15.9583.753
128E_DC30:DG7_F0.057-0.184-0.349-1.099-5.8581.149
129E_DC31:DG6_F-0.304-0.3640.302-6.2991.076-1.792
131E_DC33:DG4_F0.014-0.2740.086-6.668-9.227-1.829
11E_DG3:DC34_F-0.023-0.276-0.0311.091-6.28-6.686
15E_DG7:DC30_F-0.961-0.3410.054-6.126-8.5731.911
16E_DG8:DC29_F-0.358-0.183-0.384-9.6-6.1255.175
17E_DG9:DC28_F-0.47-0.333-0.085-1.227-10.6453.034
19E_DG11:DC26_F0.066-0.1980.16213.492-12.2463.835
112E_DG14:DC23_F-0.259-0.235-0.153-7.153-7.4612.343
114E_DG16:DC21_F0.071-0.1490.05412.763-8.151-0.631
118E_DG20:DC17_F-0.632-0.193-0.059-11.751-14.7992.292
120E_DG22:DC15_F0.223-0.1660.097-1.493-7.7740.785
121E_DG23:DC14_F-0.474-0.091-0.166-3.8671.5144.777
122E_DG24:DC13_F-0.488-0.2250.0576.414-1.947-1.021
133E_DG35:DC2_F-1.301-0.692-0.098-5.1471.745-7.724
113E_DT15:DA22_F-0.068-0.0970.056-1.745-4.3626.696
119E_DT21:DA16_F-0.096-0.2480.455-11.551-9.664-0.535
126E_DT28:DA9_F0.301-0.240.058-2.187-14.8845.722
127E_DT29:DA8_F-0.642-0.4090.03-7.254-7.0474.567
130E_DT32:DA5_F-0.535-0.2840.285-0.479-13.29-5.669
132E_DT34:DA3_F0.496-0.2670.051-2.767-13.2628.547

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.