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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0952
PDB ID:
2O8C
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
EE_6OG8DC9:DG22DT23_FF
3.63
0.845
3.225
-9.037
-0.645
10.714
3.814
-19.821
0.095
-2.872
40.216
14.023
1
2
EE_DA3DC4:DG27DT28_FF
0.89
-0.604
3.264
-4.179
0.345
33.371
-1.1
-2.207
3.127
0.597
7.243
33.626
1
11
EE_DA13DG14:DC17DT18_FF
0.006
0.319
3.019
0.088
18.515
19.692
-3.899
0.009
2.431
43.627
-0.206
26.967
1
3
EE_DC4DC5:DG26DG27_FF
-0.609
-0.084
2.906
10.334
1.718
26.493
-0.507
3.263
2.487
3.575
-21.51
28.455
1
4
EE_DC5DG6:DC25DG26_FF
-0.179
0.094
3.313
-9.414
10.563
35.966
-1.2
-0.926
3.165
16.349
14.57
38.563
1
7
EE_DC9DG10:DC21DG22_FF
0.201
-0.123
2.671
1.434
13.329
29.839
-2.099
-0.155
2.406
24.395
-2.624
32.65
1
9
EE_DC11DT12:DA19DG20_FF
-0.205
-0.241
3.659
-0.496
6.844
34.964
-1.502
0.256
3.552
11.258
0.815
35.61
1
1
EE_DG1DA3:DT28DC30_FF
-1.072
1.645
5.394
-17.332
6.183
70.484
1.041
-0.072
5.606
5.268
14.769
72.544
1
5
EE_DG6DC7:DG24DC25_FF
-0.011
-0.259
3.287
2.149
1.728
34.406
-0.705
0.352
3.264
2.916
-3.626
34.513
1
8
EE_DG10DC11:DG20DC21_FF
0.4
-0.442
3.12
5.967
8.078
23.395
-3.206
0.72
2.828
18.846
-13.921
25.432
1
12
EE_DG14DG15:DC16DC17_FF
-0.557
-0.671
4.306
2.214
14.122
25.94
-5.103
1.685
3.432
28.84
-4.521
29.558
1
10
EE_DT12DA13:DT18DA19_FF
0.961
1.601
3.004
1.662
-4.325
45.584
2.395
-1.104
2.88
-5.565
-2.139
45.806
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.