2O8C: Base Pair Morphology Step Parameters

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NDB ID: PD0952 PDB ID: 2O8C

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	EE_6OG8DC9:DG22DT23_FF	3.63	0.845	3.225	-9.037	-0.645	10.714	3.814	-19.821	0.095	-2.872	40.216	14.023
1	2	EE_DA3DC4:DG27DT28_FF	0.89	-0.604	3.264	-4.179	0.345	33.371	-1.1	-2.207	3.127	0.597	7.243	33.626
1	11	EE_DA13DG14:DC17DT18_FF	0.006	0.319	3.019	0.088	18.515	19.692	-3.899	0.009	2.431	43.627	-0.206	26.967
1	3	EE_DC4DC5:DG26DG27_FF	-0.609	-0.084	2.906	10.334	1.718	26.493	-0.507	3.263	2.487	3.575	-21.51	28.455
1	4	EE_DC5DG6:DC25DG26_FF	-0.179	0.094	3.313	-9.414	10.563	35.966	-1.2	-0.926	3.165	16.349	14.57	38.563
1	7	EE_DC9DG10:DC21DG22_FF	0.201	-0.123	2.671	1.434	13.329	29.839	-2.099	-0.155	2.406	24.395	-2.624	32.65
1	9	EE_DC11DT12:DA19DG20_FF	-0.205	-0.241	3.659	-0.496	6.844	34.964	-1.502	0.256	3.552	11.258	0.815	35.61
1	1	EE_DG1DA3:DT28DC30_FF	-1.072	1.645	5.394	-17.332	6.183	70.484	1.041	-0.072	5.606	5.268	14.769	72.544
1	5	EE_DG6DC7:DG24DC25_FF	-0.011	-0.259	3.287	2.149	1.728	34.406	-0.705	0.352	3.264	2.916	-3.626	34.513
1	8	EE_DG10DC11:DG20DC21_FF	0.4	-0.442	3.12	5.967	8.078	23.395	-3.206	0.72	2.828	18.846	-13.921	25.432
1	12	EE_DG14DG15:DC16DC17_FF	-0.557	-0.671	4.306	2.214	14.122	25.94	-5.103	1.685	3.432	28.84	-4.521	29.558
1	10	EE_DT12DA13:DT18DA19_FF	0.961	1.601	3.004	1.662	-4.325	45.584	2.395	-1.104	2.88	-5.565	-2.139	45.806

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.