A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 2O8K  PDB ID: 2O8K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18B_DA108:DT121_C0.415-0.0920.243-19.811-3.102-1.466
17B_DC107:DG122_C0.42-0.2760.255-6.868-19.637-0.362
19B_DC109:DG120_C-0.533-0.1230.228-2.411-13.206-2.344
114B_DC114:DG115_C-0.219-0.157-0.4391.284-17.3855.202
15B_DG105:DC124_C0.813-0.587-1.534-11.152-4.352-1.691
16B_DG106:DC123_C0.559-0.11-0.079-5.009-6.85-0.604
110B_DG110:DC119_C0.461-0.170.2277.777-21.1030.903
11B_DT101:DA128_C0.296-0.296-0.556-21.718-21.2269.631
12B_DT102:DA127_C-0.204-0.0710.063-8.5550.5961.539
13B_DT103:DA126_C-0.497-0.09-0.219-5.108-17.437-0.81
14B_DT104:DA125_C-0.685-0.133-0.5235.29-9.2761.495
111B_DT111:DA118_C-0.557-0.062-0.049-18.191-14.2941.168
112B_DT112:DA117_C-0.483-0.0910.379-3.024-6.169-1.127
113B_DT113:DA116_C-0.365-0.2740.77620.1860.532-0.827

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.