2OE8: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: DR0036 PDB ID: 2OE8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	10	A_A1411:U1489_B	0.196	-0.213	0.287	1.181	-15.192	2.328
1	13	A_A14:U86_B	-0.132	-0.122	0.138	-2.537	-17.038	7.747
1	3	A_C1404:G1497_B	0.343	-0.064	-0.005	1.863	-10.803	0.515
1	6	A_C1407:G1494_B	0.232	-0.185	-0.19	6.251	-14.169	2.249
1	8	A_C1409:A1492_B	-5.392	-0.936	0.546	16.277	-16.896	67.284
1	14	A_C15:G85_B	0.391	-0.201	-0.015	2.972	-14.698	0.696
1	15	A_C16:G84_B	0.582	-0.058	0.086	0.045	-7.811	2.98
1	1	A_G2:C99_B	-0.078	-0.095	-0.112	-4.73	-11.554	-1.901
1	2	A_G3:C98_B	-0.146	-0.337	-0.241	-4.901	-14.467	1.111
1	4	A_G1405:C1496_B	-0.329	-0.087	-0.226	-6.473	-13.928	2.567
1	7	A_G1408:A1493_B	7.862	-4.773	-0.347	-19.035	-21.377	-53.012
1	11	A_G1412:C1488_B	-0.234	-0.205	0.164	-2.697	-17.667	-1.777
1	5	A_U1406:U1495_B	-2.374	-1.727	0.078	6.051	-17.426	1.012
1	9	A_U1410:A1490_B	-0.015	-0.072	0.183	-3.384	-13.802	1.833
1	12	A_U1413:A1487_B	0.057	-0.126	0.22	0.958	-12.41	5.963

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.