A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
Search for released structures

NDB ID: DR0036  PDB ID: 2OE8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110A_A1411:U1489_B0.196-0.2130.2871.181-15.1922.328
113A_A14:U86_B-0.132-0.1220.138-2.537-17.0387.747
13A_C1404:G1497_B0.343-0.064-0.0051.863-10.8030.515
16A_C1407:G1494_B0.232-0.185-0.196.251-14.1692.249
18A_C1409:A1492_B-5.392-0.9360.54616.277-16.89667.284
114A_C15:G85_B0.391-0.201-0.0152.972-14.6980.696
115A_C16:G84_B0.582-0.0580.0860.045-7.8112.98
11A_G2:C99_B-0.078-0.095-0.112-4.73-11.554-1.901
12A_G3:C98_B-0.146-0.337-0.241-4.901-14.4671.111
14A_G1405:C1496_B-0.329-0.087-0.226-6.473-13.9282.567
17A_G1408:A1493_B7.862-4.773-0.347-19.035-21.377-53.012
111A_G1412:C1488_B-0.234-0.2050.164-2.697-17.667-1.777
15A_U1406:U1495_B-2.374-1.7270.0786.051-17.4261.012
19A_U1410:A1490_B-0.015-0.0720.183-3.384-13.8021.833
112A_U1413:A1487_B0.057-0.1260.220.958-12.415.963

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.