A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: DR0036  PDB ID: 2OE8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19AA_A1411G1412:C1488U1489_BB-0.594-1.1583.264-0.0239.10331.529-3.541.0482.82916.3310.04232.784
112AA_A14C15:G85U86_BB-0.813-1.2523.096-0.2536.33432.746-3.1441.3792.81811.1050.44433.337
13AA_C1404G1405:C1496G1497_BB0.11-1.5123.321.15614.87727.792-5.308-0.0062.24428.517-2.21631.474
16AA_C1407G1408:A1493G1494_BB-4.26-2.0014.3572.67720.09863.92-2.7994.0033.50218.501-2.46466.732
17AA_C1409U1410:A1490A1492_BB-0.5950.7263.675-1.543.93175.5890.4580.4333.7133.2051.25675.689
113AA_C15C16:G84G85_BB0.02-1.353.399-1.6332.80135.155-2.651-0.283.2814.6252.69735.3
11AA_G2G3:C98C99_BB0.049-1.1073.213-0.70510.00333.742-3.229-0.182.78116.7781.18235.159
12AA_G3C1404:G1497C98_BB0.381-1.4663.11-0.2754.89430.786-3.583-0.7572.8469.1460.51531.164
14AA_G1405U1406:U1495C1496_BB0.174-1.8232.704-5.0138.15322.809-6.068-1.5181.8719.54712.0224.712
110AA_G1412U1413:A1487C1488_BB0.784-1.0623.122-0.92311.0230.929-3.582-1.5312.57819.8831.66532.801
15AA_U1406C1407:G1494U1495_BB0.223-1.1073.3412.0584.59546.025-1.801-0.1073.2295.856-2.62346.285
18AA_U1410A1411:U1489A1490_BB0.171-1.1382.998-1.59811.51834.475-3.214-0.4662.49218.7842.60636.327
111AA_U1413A14:U86A1487_BB0.408-1.4673.0440.78516.35833.183-4.167-0.5572.12326.715-1.28336.902

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.