2OZS: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: PD0994 PDB ID: 2OZS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	T_DA7:DT111_P	0.054	-0.111	0.145	-3.329	-7.178	5.801
1	7	T_DA10:DT108_P	-0.114	0.005	-0.189	-0.533	-16.83	-6.553
1	9	T_DA12:DT106_P	-0.183	-0.386	-0.206	-6.502	-10.039	-1.845
1	1	T_DC4:DDG114_P	0.419	-0.156	-0.481	5.011	-5.736	-1.396
1	8	T_DC11:DG107_P	0.501	-0.108	0.252	-2.233	-10.164	3.751
1	11	T_DC14:DG104_P	0.325	-0.256	-0.055	3.344	-9.393	-4.53
1	12	T_DC15:DG103_P	-0.517	-0.17	-0.041	-8.134	-7.45	-9.361
1	14	T_DC17:DG101_P	0.598	-0.347	-0.314	15.956	5.766	-4.98
1	6	T_DG9:DC109_P	0.117	-0.308	0.082	11.128	-9.399	0.462
1	10	T_DG13:DC105_P	-0.27	-0.207	-0.067	2.154	-10.154	-4.398
1	13	T_DG16:DC102_P	0.345	-0.073	0.341	5.598	-0.605	-9.062
1	2	T_DT5:DA113_P	-0.214	-0.071	-0.204	3.743	-0.249	-7.81
1	3	T_DT6:DA112_P	-0.039	-0.243	0.005	10.579	-15.393	5.563
1	5	T_DT8:DA110_P	-0.019	0.1	-0.117	11.54	-12.6	1.211

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.