2OZS: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237

Search for released structures

NDB ID: PD0994 PDB ID: 2OZS

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	TT_DA7DT8:DA110DT111_PP	-0.945	-0.583	2.914	1.493	2.3	29.681	-1.554	2.11	2.812	4.477	-2.906	29.805
1	7	TT_DA10DC11:DG107DT108_PP	0.989	-0.659	3.258	-2.372	7.391	35.788	-2.033	-1.89	2.998	11.856	3.804	36.593
1	9	TT_DA12DG13:DC105DT106_PP	0.116	0.071	3.114	-3.205	5.918	30.301	-0.952	-0.804	3.045	11.148	6.038	31.023
1	1	TT_DC4DT5:DA113DDG114_PP	-1.398	-0.94	3.498	-1.097	5.61	27.697	-3.291	2.595	3.299	11.563	2.261	28.269
1	8	TT_DC11DA12:DT106DG107_PP	-0.894	0.095	3.358	2.297	7.646	32.671	-1.113	1.931	3.228	13.345	-4.009	33.607
1	11	TT_DC14DC15:DG103DG104_PP	0.304	-0.614	3.521	1.383	11.808	31.752	-3.05	-0.289	3.111	20.696	-2.424	33.851
1	12	TT_DC15DG16:DC102DG103_PP	0.697	0.501	3.199	-2.022	-1.861	42.27	0.878	-1.164	3.14	-2.578	2.8	42.355
1	6	TT_DG9DA10:DT108DC109_PP	-1.231	-0.035	3.526	-3.537	7.718	36.599	-1.159	1.406	3.545	12.091	5.54	37.537
1	10	TT_DG13DC14:DG104DC105_PP	-0.209	-0.786	3.154	-0.88	3.96	35.205	-1.845	0.22	3.054	6.521	1.448	35.43
1	13	TT_DG16DC17:DG101DC102_PP	1.208	-0.317	3.072	7.447	5.738	31.163	-1.544	-0.889	3.162	10.389	-13.482	32.517
1	2	TT_DT5DT6:DA112DA113_PP	0.659	-1.011	3.278	-2.798	0.356	34.416	-1.757	-1.54	3.205	0.6	4.719	34.528
1	3	TT_DT6DA7:DT111DA112_PP	0.7	-0.611	3.745	2.347	-1.781	33.969	-0.714	-0.763	3.81	-3.041	-4.009	34.093
1	5	TT_DT8DG9:DC109DA110_PP	-0.008	0.104	3.331	-0.104	11.806	32.548	-1.697	-0.002	3.176	20.251	0.178	34.568

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.