A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PD0991  PDB ID: 2PFP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_DA8:DT4_P0.063-0.086-0.14-5.374-5.0921.156
11T_DC1:DG4_D0.221-0.2810.47-13.618-6.754-4.393
14T_DC4:DG1_D0.663-0.240.19213.81-11.782-0.567
18T_DC9:DG3_P0.044-0.0820.0442.106-6.95-2.972
12T_DG2:DC3_D-0.304-0.21-0.189-2.760.67-0.267
13T_DG3:DC2_D-0.066-0.1370.026.633-0.984-4.849
15T_DG6:DC6_P-0.126-0.1560.0572.468-5.203-4.221
110T_DG11:DC1_P-0.243-0.1380.40821.029-16.4152.897
16T_DT7:DA5_P0.073-0.1920.284-3.449-19.5943.57
19T_DT10:DA2_P-0.07-0.134-0.057.453-6.3131.328

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.