A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: PD1009  PDB ID: 2PI0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA3:DT32_F0.324-0.2520.266-5.609-15.0435.452
14E_DA5:DT30_F0.312-0.249-0.087-0.126-6.141-3.116
17E_DA8:DT27_F-0.178-0.127-0.2729.934-16.063-0.099
18E_DA9:DT26_F0.52-0.168-0.348.404-23.094-5.807
19E_DA10:DT25_F0.307-0.3140.20713.429-17.888-3.646
110E_DA11:DT24_F0.188-0.310.2218.094-18.8230.217
114E_DA15:DT20_F0.41-0.31-0.2897.646-18.282-4.689
115E_DA16:DT19_F0.255-0.3660.0767.24-14.352-1.34
116E_DA17:DT18_F-0.055-0.150.061-0.306-16.472.608
120E_DA21:DT14_F0.564-0.436-0.244.403-12.69-6.845
122E_DA23:DT12_F-0.057-0.077-0.1237.482-10.957-0.287
123E_DA24:DT11_F-0.0540.028-0.0129.565-11.21-1.095
127E_DA28:DT7_F-0.255-0.2620.0277.332-16.644-0.987
128E_DA29:DT6_F0.046-0.2670.31511.659-16.857-2.621
129E_DA30:DT5_F0.3840.050.0472.878-18.5365.081
11E_DC2:DG33_F-0.512-0.2540.1171.832-16.218-11.081
111E_DC12:DG23_F-0.335-0.2260.178-0.956-16.827-0.834
15E_DG6:DC29_F-0.336-0.3340.3213.509-13.0023.276
16E_DG7:DC28_F-0.275-0.435-0.275-4.527-4.561-9.487
113E_DG14:DC21_F-0.0530.101-0.11813.731-14.9464.343
117E_DG18:DC17_F-0.320.0220.116-4.874-11.4982.172
118E_DG19:DC16_F0.046-0.1760.008-9.307-4.941-1.829
119E_DG20:DC15_F-0.121-0.137-0.0016.465-10.294-1.317
121E_DG22:DC13_F-0.105-0.5020.19111.257-19.9111.021
124E_DG25:DC10_F-0.201-0.0990.054-9.026-23.3953.773
126E_DG27:DC8_F-0.307-0.1360.00510.664-9.6543.865
130E_DG31:DC4_F-0.003-0.0930.241-0.615-11.9640.446
132E_DG33:DC2_F-0.227-0.3320.2599.072-7.9053.122
13E_DT4:DA31_F0.209-0.124-0.0085.086-5.5172.803
112E_DT13:DA22_F-0.709-0.0670.115-0.523-8.543-2.485
125E_DT26:DA9_F0.245-0.170.4-7.563-9.6180.767
131E_DT32:DA3_F-0.365-0.1390.03-5.673-13.361.007

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.