A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: AD0068  PDB ID: 2PL4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:DT5_B-0.023-0.1590.166-4.296-11.9972.067
16A_DA6:DT3_B-0.081-0.235-0.1197.378-17.2710.203
17A_DC7:DG2_B0.375-0.147-0.03910.108-17.6263.182
18A_DC8:DG1_B0.252-0.173-0.0999.973-2.202-2.185
11A_DG1:DC8_B-0.318-0.143-0.114-2.887-6.737-0.145
12A_DG2:DC7_B-0.424-0.175-0.08-10.378-15.2922.626
13A_DT3:DA6_B0.005-0.1970.105-3.989-12.292-8.101
15A_DT5:DA4_B0.018-0.1230.0828.46-14.913.403

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.