2PUE: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153

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NDB ID: PDR043 PDB ID: 2PUE

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_DA700:DT715_B	-0.016	-0.112	-0.186	-10.54	2.77	-2.219
1	5	B_DA704:DT711_B	-0.314	-0.387	0.052	4.618	-2.695	1.249
1	6	B_DA705:DT710_B	-0.019	-0.033	-0.257	1.68	-13.751	3.658
1	7	B_DA706:DT709_B	0.59	-0.345	0.706	16.607	-16.516	5.98
1	2	B_DC701:DG714_B	-0.423	-0.364	0.447	1.086	2.602	-0.023
1	4	B_DC703:DG712_B	-0.797	-0.361	-0.073	3.913	-14.605	-0.318
1	8	B_DC707:DG708_B	-1.027	-0.403	-0.235	12.872	-7.883	-2.797
1	14	B_DC713:DG702_B	-0.383	-0.404	0.405	-0.868	-3.962	-2.977
1	3	B_DG702:DC713_B	0.383	-0.404	0.405	0.868	-3.962	-2.977
1	9	B_DG708:DC707_B	1.027	-0.403	-0.235	-12.872	-7.883	-2.797
1	13	B_DG712:DC703_B	0.797	-0.361	-0.073	-3.913	-14.605	-0.318
1	15	B_DG714:DC701_B	0.423	-0.364	0.447	-1.086	2.602	-0.023
1	10	B_DT709:DA706_B	-0.59	-0.345	0.706	-16.607	-16.516	5.98
1	11	B_DT710:DA705_B	0.019	-0.033	-0.257	-1.68	-13.751	3.658
1	12	B_DT711:DA704_B	0.314	-0.387	0.052	-4.618	-2.695	1.249
1	16	B_DT715:DA700_B	0.016	-0.112	-0.186	10.54	2.77	-2.219

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.