A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
Search for released structures

NDB ID: PDR043  PDB ID: 2PUE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA700:DT715_B-0.016-0.112-0.186-10.542.77-2.219
15B_DA704:DT711_B-0.314-0.3870.0524.618-2.6951.249
16B_DA705:DT710_B-0.019-0.033-0.2571.68-13.7513.658
17B_DA706:DT709_B0.59-0.3450.70616.607-16.5165.98
12B_DC701:DG714_B-0.423-0.3640.4471.0862.602-0.023
14B_DC703:DG712_B-0.797-0.361-0.0733.913-14.605-0.318
18B_DC707:DG708_B-1.027-0.403-0.23512.872-7.883-2.797
114B_DC713:DG702_B-0.383-0.4040.405-0.868-3.962-2.977
13B_DG702:DC713_B0.383-0.4040.4050.868-3.962-2.977
19B_DG708:DC707_B1.027-0.403-0.235-12.872-7.883-2.797
113B_DG712:DC703_B0.797-0.361-0.073-3.913-14.605-0.318
115B_DG714:DC701_B0.423-0.3640.447-1.0862.602-0.023
110B_DT709:DA706_B-0.59-0.3450.706-16.607-16.5165.98
111B_DT710:DA705_B0.019-0.033-0.257-1.68-13.7513.658
112B_DT711:DA704_B0.314-0.3870.052-4.618-2.6951.249
116B_DT715:DA700_B0.016-0.112-0.18610.542.77-2.219

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.