Download
Software
Tools
Education
Standards
About NDB
A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
Search DNA
Search RNA
Advanced Search
Search for released structures
NDB ID:
PDR043
PDB ID:
2PUE
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
B_DA700:DT715_B
-0.016
-0.112
-0.186
-10.54
2.77
-2.219
1
5
B_DA704:DT711_B
-0.314
-0.387
0.052
4.618
-2.695
1.249
1
6
B_DA705:DT710_B
-0.019
-0.033
-0.257
1.68
-13.751
3.658
1
7
B_DA706:DT709_B
0.59
-0.345
0.706
16.607
-16.516
5.98
1
2
B_DC701:DG714_B
-0.423
-0.364
0.447
1.086
2.602
-0.023
1
4
B_DC703:DG712_B
-0.797
-0.361
-0.073
3.913
-14.605
-0.318
1
8
B_DC707:DG708_B
-1.027
-0.403
-0.235
12.872
-7.883
-2.797
1
14
B_DC713:DG702_B
-0.383
-0.404
0.405
-0.868
-3.962
-2.977
1
3
B_DG702:DC713_B
0.383
-0.404
0.405
0.868
-3.962
-2.977
1
9
B_DG708:DC707_B
1.027
-0.403
-0.235
-12.872
-7.883
-2.797
1
13
B_DG712:DC703_B
0.797
-0.361
-0.073
-3.913
-14.605
-0.318
1
15
B_DG714:DC701_B
0.423
-0.364
0.447
-1.086
2.602
-0.023
1
10
B_DT709:DA706_B
-0.59
-0.345
0.706
-16.607
-16.516
5.98
1
11
B_DT710:DA705_B
0.019
-0.033
-0.257
-1.68
-13.751
3.658
1
12
B_DT711:DA704_B
0.314
-0.387
0.052
-4.618
-2.695
1.249
1
16
B_DT715:DA700_B
0.016
-0.112
-0.186
10.54
2.77
-2.219
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.