2PUE: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: PDR043 PDB ID: 2PUE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	BB_DA700DC701:DG714DT715_BB	0.34	-1.203	3.058	-7.25	6.885	22.361	-4.694	-2.757	2.364	16.722	17.608	24.469
1	5	BB_DA704DA705:DT710DT711_BB	-0.433	0.495	3.602	0.931	2.769	36.375	0.366	0.834	3.617	4.427	-1.489	36.488
1	6	BB_DA705DA706:DT709DT710_BB	0.36	-0.108	3.059	-9.448	2.75	36.288	-0.498	-1.696	2.864	4.319	14.836	37.555
1	7	BB_DA706DC707:DG708DT709_BB	-0.789	-0.373	3.542	6.245	0.257	25.617	-0.891	3.493	3.257	0.57	-13.824	26.356
1	2	BB_DC701DG702:DC713DG714_BB	-1.177	-0.413	3.439	0.932	-2.405	38.977	-0.313	1.878	3.43	-3.599	-1.394	39.059
1	4	BB_DC703DA704:DT711DG712_BB	1.099	1.367	3.412	-0.798	2.071	38.63	1.796	-1.762	3.455	3.127	1.205	38.691
1	8	BB_DC707DG708:DC707DG708_BB	0.0	1.625	5.268	0.0	47.268	23.475	-4.444	0.0	3.867	65.068	0.0	52.475
1	14	BB_DC713DG714:DC701DG702_BB	1.177	-0.413	3.439	-0.931	-2.405	38.977	-0.313	-1.878	3.43	-3.599	1.394	39.059
1	3	BB_DG702DC703:DG712DC713_BB	-0.887	-0.61	3.3	0.694	-1.551	28.67	-0.877	1.946	3.306	-3.129	-1.399	28.719
1	9	BB_DG708DT709:DA706DC707_BB	0.789	-0.373	3.542	-6.245	0.257	25.617	-0.891	-3.493	3.257	0.57	13.824	26.356
1	13	BB_DG712DC713:DG702DC703_BB	0.887	-0.61	3.3	-0.694	-1.551	28.67	-0.877	-1.946	3.306	-3.129	1.399	28.719
1	15	BB_DG714DT715:DA700DC701_BB	-0.34	-1.203	3.058	7.25	6.885	22.361	-4.694	2.757	2.364	16.721	-17.608	24.469
1	10	BB_DT709DT710:DA705DA706_BB	-0.36	-0.108	3.059	9.448	2.75	36.288	-0.498	1.696	2.864	4.319	-14.836	37.555
1	11	BB_DT710DT711:DA704DA705_BB	0.433	0.495	3.602	-0.931	2.769	36.375	0.366	-0.834	3.617	4.427	1.489	36.488
1	12	BB_DT711DG712:DC703DA704_BB	-1.099	1.367	3.412	0.798	2.071	38.63	1.796	1.762	3.455	3.127	-1.205	38.691

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.