A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891
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NDB ID: PDR043  PDB ID: 2PUE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_DA700DC701:DG714DT715_BB0.34-1.2033.058-7.256.88522.361-4.694-2.7572.36416.72217.60824.469
15BB_DA704DA705:DT710DT711_BB-0.4330.4953.6020.9312.76936.3750.3660.8343.6174.427-1.48936.488
16BB_DA705DA706:DT709DT710_BB0.36-0.1083.059-9.4482.7536.288-0.498-1.6962.8644.31914.83637.555
17BB_DA706DC707:DG708DT709_BB-0.789-0.3733.5426.2450.25725.617-0.8913.4933.2570.57-13.82426.356
12BB_DC701DG702:DC713DG714_BB-1.177-0.4133.4390.932-2.40538.977-0.3131.8783.43-3.599-1.39439.059
14BB_DC703DA704:DT711DG712_BB1.0991.3673.412-0.7982.07138.631.796-1.7623.4553.1271.20538.691
18BB_DC707DG708:DC707DG708_BB0.01.6255.2680.047.26823.475-4.4440.03.86765.0680.052.475
114BB_DC713DG714:DC701DG702_BB1.177-0.4133.439-0.931-2.40538.977-0.313-1.8783.43-3.5991.39439.059
13BB_DG702DC703:DG712DC713_BB-0.887-0.613.30.694-1.55128.67-0.8771.9463.306-3.129-1.39928.719
19BB_DG708DT709:DA706DC707_BB0.789-0.3733.542-6.2450.25725.617-0.891-3.4933.2570.5713.82426.356
113BB_DG712DC713:DG702DC703_BB0.887-0.613.3-0.694-1.55128.67-0.877-1.9463.306-3.1291.39928.719
115BB_DG714DT715:DA700DC701_BB-0.34-1.2033.0587.256.88522.361-4.6942.7572.36416.721-17.60824.469
110BB_DT709DT710:DA705DA706_BB-0.36-0.1083.0599.4482.7536.288-0.4981.6962.8644.319-14.83637.555
111BB_DT710DT711:DA704DA705_BB0.4330.4953.602-0.9312.76936.3750.366-0.8343.6174.4271.48936.488
112BB_DT711DG712:DC703DA704_BB-1.0991.3673.4120.7982.07138.631.7961.7623.4553.127-1.20538.691

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.