2PWT: Base Pair Morphology Step Parameters

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NDB ID: DR0040 PDB ID: 2PWT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A9C10:G35U36_BB	0.241	-1.044	3.093	3.243	2.83	31.61	-2.382	0.112	2.999	5.166	-5.918	31.894
1	2	AA_C3G4:C42G43_BB	0.459	-1.915	3.528	2.673	9.923	33.311	-4.716	-0.359	2.884	16.819	-4.531	34.817
1	5	AA_C6C8:G37G40_BB	1.728	-3.761	6.204	-12.029	28.36	76.719	-4.11	-1.845	4.565	22.038	9.347	81.78
1	6	AA_C8A9:U36G37_BB	0.244	-1.404	3.131	-1.099	11.784	33.952	-3.775	-0.536	2.512	19.46	1.815	35.898
1	8	AA_C10C11:G34G35_BB	-0.509	-1.738	3.417	-2.224	7.197	34.463	-3.935	0.511	3.03	11.971	3.699	35.252
1	9	AA_C11G12:C33G34_BB	-0.583	-1.772	2.877	-3.196	7.618	23.782	-5.879	0.579	2.266	17.81	7.471	25.157
1	15	AA_C20G21:C25G26_BB	0.428	-1.954	3.378	-2.589	9.852	28.905	-5.516	-1.287	2.544	19.007	4.994	30.612
1	1	AA_G2C3:G43C44_BB	-0.26	-1.447	3.256	-1.79	2.29	29.974	-3.244	0.142	3.149	4.415	3.451	30.112
1	3	AA_G4U5:U41C42_BB	0.979	-1.901	3.012	-0.182	0.194	36.414	-3.067	-1.59	2.998	0.31	0.292	36.415
1	10	AA_G12G13:C32C33_BB	0.167	-1.492	3.367	0.729	6.352	34.117	-3.466	-0.169	3.051	10.71	-1.229	34.694
1	11	AA_G13U14:A31C32_BB	0.422	-1.209	3.214	0.034	2.574	35.44	-2.346	-0.687	3.122	4.221	-0.056	35.53
1	13	AA_G18U19:U27C28_BB	-2.366	-2.58	3.306	2.082	-0.198	44.587	-3.378	3.306	3.209	-0.26	-2.742	44.634
1	16	AA_G21C22:G24C25_BB	0.483	-2.263	3.317	0.963	-0.219	31.92	-4.072	-0.701	3.344	-0.398	-1.75	31.935
1	4	AA_U5C6:G40U41_BB	-0.439	-2.695	3.271	4.721	-0.778	29.882	-5.006	1.796	3.232	-1.497	-9.082	30.254
1	12	AA_U14G15:C30A31_BB	-0.392	-1.553	3.241	2.78	12.439	33.319	-4.178	1.007	2.482	20.772	-4.643	35.609
1	14	AA_U19C20:G26U27_BB	0.92	-2.492	2.949	-1.499	3.459	17.993	-9.367	-3.557	2.348	10.905	4.727	18.38

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.