A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0274  PDB ID: 2PXB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115B_A148:C163_B-3.023-0.524-0.886-3.15-17.807-93.347
15B_C134:G174_B0.161-0.3070.231-4.83-6.2961.56
114B_C147:A164_B6.424-4.1980.868-3.462-3.351-24.646
119B_C152:G159_B0.442-0.399-0.2289.818-8.1440.021
120B_C153:G158_B0.462-0.298-0.078-0.2361.546-3.242
11B_G130:C178_B-0.2590.180.29-2.166-6.3555.209
12B_G131:C177_B-0.501-0.3690.227-0.928-16.0130.186
14B_G133:U175_B-0.111-0.352-0.097-7.644-13.5720.562
17B_G136:C172_B-0.257-0.176-0.0361.67-15.119-0.921
111B_G144:C167_B-0.432-0.380.072-9.605-2.469-2.761
112B_G145:C166_B-0.322-0.3390.056-11.296-12.05-0.387
116B_G149:G162_B-6.875-2.262-0.0023.575-2.502-18.746
117B_G150:A161_B0.1981.164-0.35911.756-2.203-18.914
121B_G154:A157_B6.856-5.3570.7199.152-2.388-13.56
13B_U132:G176_B2.492-0.5640.054-4.816-12.8093.06
16B_U135:A173_B-0.116-0.040.366-2.99-11.98-2.817
18B_U137:G171_B2.647-0.5810.2274.173-15.6656.613
19B_U138:G170_B2.247-0.7840.11-8.582-16.4162.68
110B_U139:A169_B0.089-0.245-0.080.6230.257-1.114
113B_U146:G165_B2.475-0.924-0.063-5.223-8.408-5.302
118B_U151:A160_B-0.284-0.148-0.21211.205-5.932-6.603

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.