2PXD: Base Pair Morphology Step Parameters

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NDB ID: PR0275 PDB ID: 2PXD

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	14	BB_A148G149:G162C163_BB	4.916	-1.245	3.0	-3.837	6.345	27.579	-3.645	-10.649	1.981	13.013	7.871	28.54
1	5	BB_C134U135:A173G174_BB	-0.212	-1.725	3.126	0.384	7.434	31.486	-4.277	0.442	2.658	13.464	-0.695	32.333
1	13	BB_C147A148:C163A164_BB	-4.834	-0.228	2.507	1.597	7.329	10.692	-6.204	22.396	1.338	34.323	-7.481	13.054
1	18	BB_C152C153:G158G159_BB	-0.273	-1.942	3.26	-2.742	4.228	26.28	-5.245	-0.089	2.93	9.191	5.961	26.751
1	19	BB_C153G154:A157G158_BB	-2.541	-1.16	2.815	-0.447	8.017	48.362	-1.907	3.037	2.625	9.708	0.541	48.984
1	1	BB_G130G131:C177C178_BB	0.033	-1.954	3.176	1.374	10.613	29.402	-5.38	0.165	2.345	20.09	-2.6	31.248
1	2	BB_G131G132:U176C177_BB	0.292	-2.028	2.922	-2.309	12.258	28.864	-5.519	-0.872	1.896	23.267	4.383	31.391
1	3	BB_G132G133:U175U176_BB	0.23	-1.622	2.989	-3.199	11.048	35.533	-3.766	-0.715	2.369	17.545	5.08	37.291
1	4	BB_G133C134:G174U175_BB	0.172	-1.281	3.278	-1.698	5.546	39.723	-2.484	-0.44	3.07	8.109	2.483	40.128
1	7	BB_G136U137:G171C172_BB	0.393	-1.334	3.368	2.214	8.216	49.317	-2.174	-0.304	3.136	9.762	-2.631	50.001
1	10	BB_G144G145:C166C167_BB	-0.655	-1.749	3.376	2.867	10.929	34.658	-4.24	1.426	2.66	17.77	-4.661	36.399
1	11	BB_G145U146:G165C166_BB	-0.231	-0.856	3.227	0.606	3.353	39.56	-1.642	0.409	3.143	4.944	-0.893	39.7
1	15	BB_G149G150:A161G162_BB	-0.581	-1.958	3.143	2.156	4.598	54.855	-2.372	0.748	2.959	4.979	-2.334	55.071
1	16	BB_G150U151:A160A161_BB	0.654	-2.393	3.285	-4.642	1.577	19.684	-7.477	-3.864	2.857	4.522	13.314	20.28
1	6	BB_U135G136:C172A173_BB	-0.477	-1.753	2.926	0.22	5.61	22.202	-6.068	1.267	2.41	14.276	-0.561	22.892
1	8	BB_U137U138:G170G171_BB	-0.253	-1.821	3.281	6.342	5.845	31.504	-4.202	1.494	2.804	10.521	-11.415	32.634
1	9	BB_U138U139:A169G170_BB	-0.346	-1.928	2.873	3.063	9.822	19.66	-7.753	1.755	1.659	26.543	-8.277	22.166
1	12	BB_U146C147:A164G165_BB	-0.067	-1.832	3.258	1.203	5.53	47.31	-2.696	0.176	3.035	6.862	-1.492	47.628
1	17	BB_U151C152:G159A160_BB	0.017	-2.37	3.525	-4.961	3.629	41.776	-3.682	-0.557	3.294	5.056	6.912	42.206

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.