A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-May-2020 number of released structures: 10752
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NDB ID: PR0276  PDB ID: 2PXE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115B_A148:C163_B-3.059-0.613-0.712-4.626-17.631-92.64
15B_C134:G174_B0.097-0.411-0.083-0.677-12.720.6
114B_C147:A164_B6.445-3.879-0.148-3.997-14.104-27.483
119B_C152:G159_B0.159-0.453-0.218.509-10.0721.454
120B_C153:G158_B-0.147-0.305-0.384.9-0.0471.534
11B_G130:C178_B0.43-0.146-0.291-5.131-9.8770.425
12B_G131:C177_B-0.515-0.3650.226-2.105-15.3790.819
13B_G132:U176_B-2.143-0.424-0.122-3.435-9.3250.222
17B_G136:C172_B-0.465-0.1580.0993.212-13.783-2.689
111B_G144:C167_B-0.05-0.1710.039-9.958-12.585-0.629
112B_G145:C166_B-0.409-0.179-0.136-17.046-13.1630.035
116B_G149:G162_B-6.943-1.9930.4344.936-7.271-18.417
117B_G150:A161_B-0.1551.361-0.4438.116-11.622-16.897
121B_G154:A157_B6.89-4.7690.898.555-7.966-12.399
14B_U133:G175_B2.143-0.7370.106-0.618-5.5741.018
16B_U135:A173_B0.079-0.2720.0540.944-7.167-3.76
18B_U137:G171_B2.373-0.7370.1634.614-9.977-0.852
19B_U138:G170_B2.029-0.7170.041-2.104-19.792-0.024
110B_U139:A169_B0.216-0.270.198-1.736-3.99-3.279
113B_U146:G165_B2.402-0.8420.151-5.492-7.439-8.549
118B_U151:A160_B-0.189-0.036-0.11312.94-3.991-7.319

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.