2PXF: Base Pair Morphology Parameters

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NDB ID: PR0277 PDB ID: 2PXF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	15	B_A148:C163_B	-3.264	-0.472	-0.472	-3.196	-17.259	-93.516
1	14	B_C147:A164_B	6.021	-3.512	0.971	-6.3	-1.175	-28.272
1	19	B_C152:G159_B	0.896	-0.595	-0.08	6.753	-3.55	-1.688
1	20	B_C153:G158_B	0.649	-0.515	0.122	0.793	1.146	-4.784
1	1	B_G130:C178_B	-0.205	0.105	0.49	0.666	-4.467	1.653
1	2	B_G131:C177_B	-0.121	-0.533	0.168	-1.366	-11.153	-2.395
1	3	B_G132:U176_B	-2.815	-0.867	0.266	2.247	-7.564	2.652
1	4	B_G133:U175_B	-1.728	-0.821	-0.018	-4.749	-9.784	-1.225
1	5	B_G134:C174_B	-0.206	-0.418	-0.17	-9.12	-8.776	1.449
1	7	B_G136:C172_B	-0.06	-0.063	0.256	8.616	-11.635	-2.422
1	11	B_G144:C167_B	-0.492	-0.225	-0.33	-9.93	-7.83	-0.433
1	12	B_G145:C166_B	0.613	-0.236	-0.505	-19.854	-8.264	-5.136
1	16	B_G149:G162_B	-6.876	-1.917	0.332	1.663	-2.357	-13.167
1	17	B_G150:A161_B	0.569	1.131	-0.081	10.516	-2.803	-18.253
1	21	B_G154:A157_B	6.671	-5.251	0.817	13.035	-4.864	-14.29
1	6	B_U135:A173_B	0.055	-0.251	0.221	-6.472	-10.633	-6.014
1	8	B_U137:G171_B	2.825	-0.907	0.128	3.472	-13.822	0.547
1	9	B_U138:G170_B	2.643	-0.997	0.119	-4.247	-17.507	2.998
1	10	B_U139:A169_B	-0.385	-0.246	0.27	-4.556	-5.194	-0.977
1	13	B_U146:G165_B	2.837	-0.964	0.358	-12.739	-1.667	-4.842
1	18	B_U151:A160_B	-0.772	-0.204	-0.089	8.909	5.049	-7.313

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.