A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0277  PDB ID: 2PXF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115B_A148:C163_B-3.264-0.472-0.472-3.196-17.259-93.516
114B_C147:A164_B6.021-3.5120.971-6.3-1.175-28.272
119B_C152:G159_B0.896-0.595-0.086.753-3.55-1.688
120B_C153:G158_B0.649-0.5150.1220.7931.146-4.784
11B_G130:C178_B-0.2050.1050.490.666-4.4671.653
12B_G131:C177_B-0.121-0.5330.168-1.366-11.153-2.395
13B_G132:U176_B-2.815-0.8670.2662.247-7.5642.652
14B_G133:U175_B-1.728-0.821-0.018-4.749-9.784-1.225
15B_G134:C174_B-0.206-0.418-0.17-9.12-8.7761.449
17B_G136:C172_B-0.06-0.0630.2568.616-11.635-2.422
111B_G144:C167_B-0.492-0.225-0.33-9.93-7.83-0.433
112B_G145:C166_B0.613-0.236-0.505-19.854-8.264-5.136
116B_G149:G162_B-6.876-1.9170.3321.663-2.357-13.167
117B_G150:A161_B0.5691.131-0.08110.516-2.803-18.253
121B_G154:A157_B6.671-5.2510.81713.035-4.864-14.29
16B_U135:A173_B0.055-0.2510.221-6.472-10.633-6.014
18B_U137:G171_B2.825-0.9070.1283.472-13.8220.547
19B_U138:G170_B2.643-0.9970.119-4.247-17.5072.998
110B_U139:A169_B-0.385-0.2460.27-4.556-5.194-0.977
113B_U146:G165_B2.837-0.9640.358-12.739-1.667-4.842
118B_U151:A160_B-0.772-0.204-0.0898.9095.049-7.313

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.