2PXF: Base Pair Morphology Step Parameters

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NDB ID: PR0277 PDB ID: 2PXF

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	14	BB_A148G149:G162C163_BB	5.716	-1.149	2.953	0.269	9.297	29.23	-3.748	-10.77	2.528	17.861	-0.516	30.644
1	13	BB_C147A148:C163A164_BB	-4.711	-0.559	2.647	-0.603	3.823	9.004	-9.392	26.616	2.505	23.008	3.628	9.799
1	18	BB_C152C153:G158G159_BB	-0.289	-1.958	3.454	-2.809	5.115	32.143	-4.382	0.02	3.127	9.144	5.021	32.655
1	19	BB_C153G154:A157G158_BB	-2.47	-1.177	2.852	-1.091	7.445	45.507	-2.048	3.075	2.693	9.548	1.4	46.092
1	1	BB_G130G131:C177C178_BB	-0.394	-1.695	3.04	1.176	9.525	36.657	-3.671	0.738	2.523	14.834	-1.832	37.851
1	2	BB_G131G132:U176C177_BB	0.435	-2.246	2.809	-3.885	9.411	22.269	-7.388	-1.889	1.639	22.891	9.449	24.46
1	3	BB_G132G133:U175U176_BB	0.288	-1.649	3.219	-0.819	11.083	37.263	-3.716	-0.524	2.634	16.89	1.249	38.828
1	4	BB_G133G134:C174U175_BB	0.222	-1.765	3.404	0.956	8.505	36.05	-3.903	-0.224	2.931	13.509	-1.518	37.02
1	5	BB_G134U135:A173C174_BB	-0.077	-1.524	3.171	-2.367	7.063	36.229	-3.287	-0.174	2.834	11.212	3.758	36.962
1	7	BB_G136U137:G171C172_BB	0.51	-1.365	3.439	4.583	8.071	47.174	-2.33	-0.256	3.211	9.971	-5.662	48.027
1	10	BB_G144G145:C166C167_BB	-0.57	-1.654	3.535	-0.342	7.592	38.882	-3.363	0.8	3.174	11.274	0.507	39.589
1	11	BB_G145U146:G165C166_BB	-0.192	-0.916	3.153	-3.736	6.098	39.941	-1.966	-0.117	2.993	8.842	5.416	40.551
1	15	BB_G149G150:A161G162_BB	-0.523	-1.66	3.242	-0.358	4.342	55.631	-2.018	0.539	3.118	4.644	0.383	55.787
1	16	BB_G150U151:A160A161_BB	0.677	-2.529	3.347	-4.705	3.326	19.027	-8.794	-4.036	2.628	9.775	13.829	19.873
1	6	BB_U135G136:C172A173_BB	-0.501	-1.771	2.834	-0.778	5.751	22.89	-5.874	1.016	2.34	14.2	1.921	23.605
1	8	BB_U137U138:G170G171_BB	-0.05	-1.676	3.333	7.092	5.796	34.59	-3.549	1.082	2.956	9.541	-11.676	35.747
1	9	BB_U138U139:A169G170_BB	-0.102	-1.783	3.075	3.209	12.083	17.16	-8.703	1.3	1.47	35.07	-9.313	21.204
1	12	BB_U146C147:A164G165_BB	-0.645	-1.923	3.246	2.877	4.077	42.631	-3.017	1.156	3.011	5.585	-3.941	42.908
1	17	BB_U151C152:G159A160_BB	0.254	-2.187	3.254	-2.798	2.679	40.715	-3.416	-0.662	3.087	3.84	4.011	40.891

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.