2PXK: Base Pair Morphology Step Parameters

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NDB ID: PR0278 PDB ID: 2PXK

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	14	BB_A148G149:G162C163_BB	5.223	-1.223	3.106	-2.753	8.851	27.854	-3.978	-10.802	2.111	17.774	5.528	29.327
1	13	BB_C147A148:C163A164_BB	-4.724	-0.457	2.563	2.239	7.392	7.248	-9.208	27.634	0.439	44.87	-13.587	10.589
1	18	BB_C152C153:G158G159_BB	-0.384	-1.813	3.387	-2.748	4.102	32.062	-3.971	0.201	3.157	7.373	4.939	32.43
1	19	BB_C153G154:A157G158_BB	-2.721	-1.276	2.875	1.244	13.059	45.555	-2.46	3.474	2.373	16.467	-1.569	47.309
1	1	BB_G130G131:C177C178_BB	-0.232	-2.214	2.805	-3.258	8.137	27.429	-5.853	-0.093	2.088	16.631	6.658	28.77
1	2	BB_G131G132:U176C177_BB	0.212	-1.836	3.454	1.16	10.476	36.184	-4.182	-0.181	2.837	16.442	-1.82	37.639
1	3	BB_G132U133:G175U176_BB	0.63	-1.188	3.1	0.572	3.846	43.68	-1.932	-0.792	2.998	5.157	-0.766	43.844
1	5	BB_G134U135:A173C174_BB	-0.407	-1.262	3.074	-1.338	10.1	37.395	-3.012	0.467	2.669	15.405	2.04	38.71
1	7	BB_G136U137:G171C172_BB	0.331	-1.3	3.138	-1.341	6.058	43.371	-2.28	-0.562	2.928	8.147	1.803	43.791
1	10	BB_G144G145:C166C167_BB	-0.316	-1.854	3.586	1.97	10.668	33.914	-4.609	0.808	2.868	17.733	-3.274	35.558
1	11	BB_G145U146:G165C166_BB	-0.17	-0.856	3.065	-1.225	2.694	42.142	-1.444	0.119	3.011	3.741	1.701	42.241
1	15	BB_G149G150:A161G162_BB	-0.206	-1.894	3.191	-0.228	3.362	52.174	-2.362	0.219	3.072	3.818	0.259	52.275
1	16	BB_G150U151:A160A161_BB	0.606	-2.057	3.218	-4.974	0.127	20.924	-5.562	-3.55	2.982	0.342	13.452	21.501
1	4	BB_U133G134:C174G175_BB	0.25	-2.171	2.955	1.682	11.476	20.418	-8.203	-0.195	1.544	29.499	-4.325	23.451
1	6	BB_U135G136:C172A173_BB	-0.384	-1.579	3.168	2.049	10.731	26.626	-5.287	1.176	2.333	22.152	-4.23	28.743
1	8	BB_U137U138:G170G171_BB	-0.072	-1.476	3.312	8.846	5.246	34.989	-3.075	1.319	2.963	8.5	-14.334	36.424
1	9	BB_U138U139:A169G170_BB	-0.366	-1.775	3.099	2.194	10.603	19.106	-7.969	1.647	1.817	29.112	-6.024	21.936
1	12	BB_U146C147:A164G165_BB	-0.259	-1.829	3.279	1.055	4.111	50.053	-2.444	0.379	3.123	4.848	-1.244	50.221
1	17	BB_U151C152:G159A160_BB	0.47	-2.083	3.41	-3.566	1.869	41.016	-3.166	-1.062	3.266	2.659	5.075	41.205

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.