2PXL: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: PR0279 PDB ID: 2PXL

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	13	B_A148:C163_B	-2.738	-0.494	-0.721	-3.43	-15.138	-92.167
1	12	B_C147:A164_B	6.084	-4.076	0.784	-1.279	-3.172	-20.527
1	17	B_C152:G159_B	0.255	-0.369	-0.321	12.711	-11.447	-3.233
1	18	B_C153:G158_B	0.348	-0.449	-0.026	2.206	5.153	-1.983
1	1	B_G132:U176_B	-2.243	-0.731	0.008	-0.377	-8.452	4.181
1	2	B_G133:U175_B	-2.53	-0.641	0.152	1.297	-10.321	7.036
1	3	B_G134:C174_B	-0.344	-0.14	0.3	-7.238	-12.115	3.539
1	5	B_G136:C172_B	-0.281	-0.042	0.097	1.561	-17.69	-0.519
1	9	B_G144:C167_B	-0.462	-0.242	0.29	-7.217	-5.979	2.0
1	10	B_G145:C166_B	-0.293	-0.251	-0.159	-15.415	-8.873	3.413
1	14	B_G149:G162_B	-6.941	-1.95	0.145	-0.629	-2.914	-15.663
1	15	B_G150:A161_B	-0.101	1.301	-0.166	9.94	-2.942	-13.799
1	19	B_G154:A157_B	7.02	-5.336	0.481	12.08	-0.199	-11.427
1	4	B_U135:A173_B	0.401	-0.118	0.302	-4.95	-9.345	1.014
1	6	B_U137:G171_B	2.27	-0.552	0.42	5.326	-15.358	2.454
1	7	B_U138:G170_B	2.367	-0.612	0.124	-3.083	-14.586	2.245
1	8	B_U139:A169_B	0.012	0.025	0.1	3.21	-1.415	6.754
1	11	B_U146:G165_B	2.385	-0.702	0.211	-11.071	-7.401	-4.507
1	16	B_U151:A160_B	-0.445	-0.103	-0.277	18.086	-4.819	-1.924

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.