A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: PR0279  PDB ID: 2PXL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
113B_A148:C163_B-2.738-0.494-0.721-3.43-15.138-92.167
112B_C147:A164_B6.084-4.0760.784-1.279-3.172-20.527
117B_C152:G159_B0.255-0.369-0.32112.711-11.447-3.233
118B_C153:G158_B0.348-0.449-0.0262.2065.153-1.983
11B_G132:U176_B-2.243-0.7310.008-0.377-8.4524.181
12B_G133:U175_B-2.53-0.6410.1521.297-10.3217.036
13B_G134:C174_B-0.344-0.140.3-7.238-12.1153.539
15B_G136:C172_B-0.281-0.0420.0971.561-17.69-0.519
19B_G144:C167_B-0.462-0.2420.29-7.217-5.9792.0
110B_G145:C166_B-0.293-0.251-0.159-15.415-8.8733.413
114B_G149:G162_B-6.941-1.950.145-0.629-2.914-15.663
115B_G150:A161_B-0.1011.301-0.1669.94-2.942-13.799
119B_G154:A157_B7.02-5.3360.48112.08-0.199-11.427
14B_U135:A173_B0.401-0.1180.302-4.95-9.3451.014
16B_U137:G171_B2.27-0.5520.425.326-15.3582.454
17B_U138:G170_B2.367-0.6120.124-3.083-14.5862.245
18B_U139:A169_B0.0120.0250.13.21-1.4156.754
111B_U146:G165_B2.385-0.7020.211-11.071-7.401-4.507
116B_U151:A160_B-0.445-0.103-0.27718.086-4.819-1.924

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.