2PXL: Base Pair Morphology Step Parameters

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NDB ID: PR0279 PDB ID: 2PXL

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	12	BB_A148G149:G162C163_BB	5.275	-0.939	3.204	-1.439	7.031	25.514	-3.722	-11.854	2.561	15.532	3.179	26.488
1	11	BB_C147A148:C163A164_BB	-4.979	-0.454	2.733	-1.314	7.85	10.637	-9.244	20.313	2.414	36.384	6.089	13.279
1	16	BB_C152C153:G158G159_BB	-0.348	-2.152	3.57	-3.147	7.411	30.048	-5.464	0.034	2.987	13.98	5.938	31.084
1	17	BB_C153G154:A157G158_BB	-1.959	-0.883	3.07	0.651	10.111	52.445	-1.568	2.22	2.844	11.321	-0.729	53.347
1	1	BB_G132G133:U175U176_BB	0.662	-1.519	3.094	-3.812	5.097	33.977	-3.268	-1.647	2.756	8.629	6.453	34.551
1	2	BB_G133G134:C174U175_BB	-0.13	-1.679	3.459	-1.711	4.879	38.516	-3.135	-0.019	3.233	7.356	2.579	38.848
1	3	BB_G134U135:A173C174_BB	-0.33	-1.56	3.146	0.486	2.084	36.048	-2.796	0.598	3.05	3.363	-0.784	36.11
1	5	BB_G136U137:G171C172_BB	0.504	-1.233	3.214	-0.802	5.859	43.612	-2.176	-0.745	3.022	7.843	1.074	43.992
1	8	BB_G144G145:C166C167_BB	-0.325	-1.712	3.45	3.695	5.451	34.406	-3.675	1.102	3.1	9.112	-6.177	35.012
1	9	BB_G145U146:G165C166_BB	-0.559	-1.048	3.178	-0.84	3.465	41.367	-1.833	0.702	3.094	4.894	1.186	41.514
1	13	BB_G149G150:A161G162_BB	-0.319	-1.524	3.165	-1.444	4.192	52.352	-1.982	0.27	3.05	4.742	1.633	52.527
1	14	BB_G150U151:A160A161_BB	0.634	-2.253	3.05	-3.199	0.055	23.126	-5.587	-2.571	2.931	0.137	7.93	23.343
1	4	BB_U135G136:C172A173_BB	-0.854	-1.532	2.89	-0.392	10.36	24.665	-5.454	1.766	2.098	22.997	0.871	26.724
1	6	BB_U137U138:G170G171_BB	-0.205	-1.773	3.305	5.736	4.865	36.104	-3.446	1.08	2.983	7.746	-9.134	36.854
1	7	BB_U138U139:A169G170_BB	0.064	-1.337	2.91	3.764	9.216	21.825	-5.645	0.837	2.155	22.87	-9.342	23.963
1	10	BB_U146C147:A164G165_BB	-0.14	-1.56	3.079	4.313	7.632	48.572	-2.385	0.459	2.797	9.19	-5.194	49.309
1	15	BB_U151C152:G159A160_BB	0.096	-1.832	3.481	-2.813	5.535	40.201	-3.267	-0.459	3.198	7.995	4.063	40.658

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.