2PXU: Base Pair Morphology Parameters

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NDB ID: PR0283 PDB ID: 2PXU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	15	B_A148:C163_B	-3.369	-0.83	-1.017	-0.516	-18.526	-95.886
1	5	B_C134:G174_B	0.846	-0.621	0.272	-5.912	-7.839	0.563
1	14	B_C147:A164_B	6.616	-4.707	0.874	-3.521	-0.297	-16.92
1	19	B_C152:G159_B	0.544	-0.534	-0.248	8.758	-7.712	1.101
1	20	B_C153:G158_B	0.238	-0.286	-0.129	2.501	0.139	-2.559
1	1	B_G130:C178_B	-0.915	-0.239	0.449	2.144	-9.455	2.08
1	2	B_G131:C177_B	-0.286	-0.449	0.168	-4.425	-20.847	-4.549
1	4	B_G133:C175_B	-0.12	-0.411	-0.047	-5.361	-11.345	0.74
1	7	B_G136:C172_B	0.145	0.072	0.325	5.648	-12.233	0.721
1	11	B_G144:C167_B	-0.649	-0.467	0.336	-4.905	-6.663	-2.71
1	12	B_G145:C166_B	-0.338	-0.354	0.172	-11.788	-11.939	-2.382
1	16	B_G149:G162_B	-6.779	-1.848	0.461	2.412	-8.057	-16.635
1	17	B_G150:A161_B	0.482	1.117	-0.31	9.051	-4.84	-16.851
1	21	B_G154:A157_B	6.603	-5.026	0.841	9.674	-2.135	-16.552
1	3	B_U132:G176_B	2.233	-0.602	0.139	-6.086	-10.086	5.964
1	6	B_U135:A173_B	0.066	-0.138	0.084	0.914	-14.793	-1.27
1	8	B_U137:G171_B	2.454	-0.824	0.311	-0.26	-15.481	-0.41
1	9	B_U138:G170_B	2.965	-0.747	0.207	-3.792	-18.556	7.562
1	10	B_U139:A169_B	0.011	-0.088	-0.08	-0.436	-3.959	0.616
1	13	B_U146:G165_B	2.212	-0.782	0.214	-12.019	-5.538	-5.528
1	18	B_U151:A160_B	0.391	-0.294	-0.208	14.116	-2.767	-7.737

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.