A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0283  PDB ID: 2PXU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
115B_A148:C163_B-3.369-0.83-1.017-0.516-18.526-95.886
15B_C134:G174_B0.846-0.6210.272-5.912-7.8390.563
114B_C147:A164_B6.616-4.7070.874-3.521-0.297-16.92
119B_C152:G159_B0.544-0.534-0.2488.758-7.7121.101
120B_C153:G158_B0.238-0.286-0.1292.5010.139-2.559
11B_G130:C178_B-0.915-0.2390.4492.144-9.4552.08
12B_G131:C177_B-0.286-0.4490.168-4.425-20.847-4.549
14B_G133:C175_B-0.12-0.411-0.047-5.361-11.3450.74
17B_G136:C172_B0.1450.0720.3255.648-12.2330.721
111B_G144:C167_B-0.649-0.4670.336-4.905-6.663-2.71
112B_G145:C166_B-0.338-0.3540.172-11.788-11.939-2.382
116B_G149:G162_B-6.779-1.8480.4612.412-8.057-16.635
117B_G150:A161_B0.4821.117-0.319.051-4.84-16.851
121B_G154:A157_B6.603-5.0260.8419.674-2.135-16.552
13B_U132:G176_B2.233-0.6020.139-6.086-10.0865.964
16B_U135:A173_B0.066-0.1380.0840.914-14.793-1.27
18B_U137:G171_B2.454-0.8240.311-0.26-15.481-0.41
19B_U138:G170_B2.965-0.7470.207-3.792-18.5567.562
110B_U139:A169_B0.011-0.088-0.08-0.436-3.9590.616
113B_U146:G165_B2.212-0.7820.214-12.019-5.538-5.528
118B_U151:A160_B0.391-0.294-0.20814.116-2.767-7.737

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.