A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PD1022  PDB ID: 2QBY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1:DT31_D-0.111-0.3310.42923.468-8.443-14.074
13C_DA3:DT29_D0.612-0.2470.0890.533-30.1871.455
19C_DA9:DT23_D-0.126-0.108-0.4625.3253.488-2.188
111C_DA11:DT21_D0.017-0.1360.387-5.538-14.703-2.654
114C_DA14:DT18_D0.566-0.2120.9254.975-11.1043.804
115C_DA15:DT17_D-0.339-0.18-0.045-1.441-23.2490.538
116C_DA16:DT16_D-0.390.6530.3212.792-16.93818.061
120C_DA20:DT12_D0.221-0.3170.684-0.113-9.868-5.333
123C_DA23:DT9_D0.5670.4180.78216.568-7.903-0.564
124C_DA24:DT8_D0.6640.1020.72517.253-15.2243.855
125C_DA25:DT7_D0.4140.1140.70111.155-8.1794.546
129C_DA29:DT3_D0.689-0.057-0.310.2534.38-1.947
131C_DA31:DT1_D-0.049-0.280.2756.49-12.669-8.868
18C_DC8:DG24_D-0.737-0.1730.887-18.4318.717-1.913
117C_DC17:DG15_D0.2880.128-0.3487.415-1.9771.624
130C_DC30:DG2_D0.071-0.1410.35911.529-12.029-5.77
12C_DG2:DC30_D-0.461-0.2780.57114.168-16.41-11.463
110C_DG10:DC22_D0.80.0280.0911.352-4.536-1.114
113C_DG13:DC19_D-0.172-0.2710.7040.731-11.8741.618
118C_DG18:DC14_D0.0030.2910.3792.623-4.9643.533
121C_DG21:DC11_D0.0470.297-0.0370.008-5.8468.386
122C_DG22:DC10_D-0.016-0.099-0.0433.136-3.2781.189
14C_DT4:DA28_D-0.118-0.1640.674-6.056-25.187-4.782
15C_DT5:DA27_D-0.761-0.0830.4471.334-21.97912.364
16C_DT6:DA26_D-1.330.2910.23-9.224-21.70514.055
17C_DT7:DA25_D-1.5210.2960.198-15.028-8.7263.891
112C_DT12:DA20_D0.104-0.0140.307-11.326-14.749-6.293
119C_DT19:DA13_D-0.716-0.0530.652-0.745-8.692-11.215
126C_DT26:DA6_D-0.115-0.1940.3463.337-7.07-6.914
127C_DT27:DA5_D-0.471-0.0080.903-7.661-8.297-1.939
128C_DT28:DA4_D0.833-0.0111.011-15.1961.5810.173

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.